Gene detail

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Gene detail information of Glyur000122s00010174.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11510.1	8.00E-18	DNA-binding storekeeper protein-related transcriptional regulator
NR	XP_003541767.1	1.76E-90	PREDICTED: mediator-associated protein 1-like [Glycine max]
Swissprot	tr\|Q9SB42\|MDA1_ARATH	3.00E-15	Mediator-associated protein 1
trEMBL	tr\|K7M1T5\|K7M1T5_SOYBN	7.00E-91	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G32440.2}

Sequence

Transcript Sequence

>Glyur000122s00010174.1
ATGGCAAAGAATCGGCGCCCTTCTCCGCTCGACGAGCCACCCACCGCATCCTCCTCCGATTCCGAGGATGACCAAATACCCTCATCCCAACCACACGAAGACGATGACGAAGAAGTAGCTGCAGCAGCAGCAGCNGCAGCAGCAGAAGCTTCATCCGAAGAAGAAGACAACGACGACGAAGAAGAAGACGACGACGACGACGAAGAAGAACCTTCAGCCCCATCTTCGCAACCCGCTTCCAAAAACCCTCCACCCCCTCCCACCAACTCCAACCCTAAACGCTCTTCCTCCTCCGAGTCCGATTCCGGATCCGACACTGACTCCGACCCGGAAAACGCGGCCCCACCCCGTCCCCCTGCTAACCCTAAAGTGAAACCCCTTGCCTCCAAGTCCATGGACCAGACCCCCAAGTCAAGGGCCCAAGCCCAGGTCCAGGCCCAAGTCTCTCCCGCGCCTGTGAGATCTGGAACGAAGCGTGTCTTAGAGAACAACGCGCACTCGAATGACACCAAACGTGCTGCCAAGAAGAAAGCAACCGATGCCGCTGCCGCCGGTGGTTCCGACGAGGAGGTGGAGGAGGACGGGAAGAAGTCCGGCGACGCCGATTCGAAGAAGAACTCGAACCCGAGAGTCTGGACCAACGAAGACGAGATTGCCATCCTGAAGGGTCTCTTCGACTTCGCTTCGAAGACTGGTAACGACCCGGTGAAGTACGTTAGCGCTTTTCACGACTTTGTGAGGAAGTCGCTCCACTTGGATCCTTCGAGCATGCAGCTGAAGGAGAAGATTCGGAGGATGAAGAAGAAGTACGAGACCATCGCGGAGAGAGCGATGAAGAACGGTGAGGGACCTACCTTCTCCAAACCCCACGACCAGAAAGTCTTCGAACTTGCCAAAAAGTTCTGGGGGGGCAACAACAATGATGCAGCAGCAGCGGAAGAGAAAGAGAAGCCTAAGTCTAACGGGAGAACCGTCAAGAGTCCCAAGAAGGAAACTACTGCTAATAGGAGGGTTTCTTCTGCGAAGAAACCACCGCCGGCGAAGAAGTTGCCAATGCCGGAGGACAGAGTGGGAGAGCCGGAAAAGCAGCCGGTGCCGGAGTCGCTGTTGGTGGTGGGTTTGAAGGGATCTGGAAAGATGGAAGTTGATAAGGTGCCTGAAACTAGCTTGGTTTTGAGGGAAATGTTCCGTTTTGACAAGGGTGTGGGTGTGTGTGAGCTGAGTGAGGATGTGGTGAAGAGGGGAGTGGAGTTGCTTGGAGAATCAACAAGGGCTGAGTTGGAGGGTAGGTGGAAGAAGCTACAGGTTGCGGAGTTGGAGCTGTTTAGGAAGCGCGCACAGCTGATTGAGGAACGGGCTAGGTTGATTGACGATCAGTCTAATTTGATATTGGAGGCCTACAAGTCGTCATCGTCATCATCAAGCCATTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00122	36483	37913	+

Gene family

Gene family	subfamily
Transcription Factors Family	GeBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000122s00010174.1	PF04504.9	DUF573	209	303	1.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	108.223
SRR1783600	control	112.032
SRR1783602	moderate drought stress	125.908
SRR1811619	moderate drought stress	125.345

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	129.621
DRR006520	Root Summer glycyrrhizin high producing strain	128.381
DRR006521	Root Winter glycyrrhizin high producing strain	98.784
DRR006522	Root Winter glycyrrhizin high producing strain	97.027
DRR006523	Root Summer glycyrrhizin low producing strain	91.004
DRR006524	Root Summer glycyrrhizin low producing strain	91.829
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.583
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	98.336
SRR2868004	Drought Stress(Tissue:root)	76.874
SRR2967015	Control (Tissue:root)	84.313

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	42.783
SRR9715740	Leave	39.122
SRR9715741	Leave	40.019
SRR9715739	Root	102.475
SRR9715742	Root	87.882
SRR9715743	Root	87.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.848
SRR8749028	MeJA induced 9h	47.571
SRR8749029	MeJA induced 9h	44.710
SRR8749030	Uninduced	10.912
SRR8749031	Uninduced	2.161
SRR8749032	Uninduced	5.309

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	74.192
SRR8400027	Control-Root	71.884