Gene detail information of Glyur000122s00010196.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G21350.15.00E-90plant U-box 8
NRXP_003635641.16.46E-173PREDICTED: U-box domain-containing protein 8-like [Vitis vinifera]
COGYP_001957542.12.00E-13hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|O81902|PUB8_ARATH7.00E-140U-box domain-containing protein 8
trEMBLtr|A5CBB7|A5CBB7_VITVI2.00E-173Putative uncharacterized protein {ECO:0000313|EMBL:CAN62279.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00122118518119654-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000122s00010196.1PF04564.10U-box7712.30E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.827
SRR1783600control13.752
SRR1783602moderate drought stress16.442
SRR1811619moderate drought stress16.433

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.172
DRR006520Root Summer glycyrrhizin high producing strain15.164
DRR006521Root Winter glycyrrhizin high producing strain31.917
DRR006522Root Winter glycyrrhizin high producing strain30.678
DRR006523Root Summer glycyrrhizin low producing strain14.807
DRR006524Root Summer glycyrrhizin low producing strain14.763
DRR006525Leaf Summer glycyrrhizin high producing strain5.123
DRR006526Leaf Summer glycyrrhizin high producing strain4.940

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.002
SRR2868004Drought Stress(Tissue:root)46.840
SRR2967015Control (Tissue:root)38.512

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.579
SRR9715740Leave26.159
SRR9715741Leave18.565
SRR9715739Root35.427
SRR9715742Root31.011
SRR9715743Root28.779

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.487
SRR8749028MeJA induced 9h11.543
SRR8749029MeJA induced 9h15.346
SRR8749030Uninduced18.106
SRR8749031Uninduced12.883
SRR8749032Uninduced17.224

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.634
SRR8400027Control-Root28.188

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved