Gene detail information of Glyur000122s00010208.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61620.1 | 1.00E-134 | phosphoinositide binding |
| NR | XP_004485689.1 | 0 | PREDICTED: nitric oxide synthase-interacting protein-like [Cicer arietinum] |
| trEMBL | tr|V7BT91|V7BT91_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW20258.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 209582 | 212608 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010208.1 | PF13923.1 | zf-C3HC4_2 | 43 | 74 | 0.00018 |
| Glyur000122s00010208.1 | PF04641.7 | Rtf2 | 186 | 268 | 9.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.792 |
| SRR1783600 | control | 38.847 |
| SRR1783602 | moderate drought stress | 41.237 |
| SRR1811619 | moderate drought stress | 41.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 56.073 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 56.214 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 83.409 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 79.829 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 50.849 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.023 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 71.722 |
| SRR2868004 | Drought Stress(Tissue:root) | 75.145 |
| SRR2967015 | Control (Tissue:root) | 74.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 39.568 |
| SRR9715740 | Leave | 44.679 |
| SRR9715741 | Leave | 41.683 |
| SRR9715739 | Root | 51.756 |
| SRR9715742 | Root | 53.267 |
| SRR9715743 | Root | 49.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 86.788 |
| SRR8749028 | MeJA induced 9h | 90.225 |
| SRR8749029 | MeJA induced 9h | 70.068 |
| SRR8749030 | Uninduced | 51.718 |
| SRR8749031 | Uninduced | 35.741 |
| SRR8749032 | Uninduced | 54.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 62.652 |
| SRR8400027 | Control-Root | 62.724 |