Gene detail

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Gene detail information of Glyur000122s00010218.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21440.1	2.00E-80	MYB-like 102
NR	XP_006594633.1	9.17E-157	PREDICTED: protein ODORANT1 [Glycine max]
Swissprot	tr\|Q8GWP0\|MYB39_ARATH	2.00E-70	Transcription factor MYB39
trEMBL	tr\|I1M2D6\|I1M2D6_SOYBN	3.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G32090.1}

Sequence

Transcript Sequence

>Glyur000122s00010218.1
CAATTATAANTCCATTATTTCTCTCTTCCTCACCCTCTTACTTTGTCGATTCTCTCACGTCTCCAAAATTTCTCCACCATCTCTGTTTCAAGCAGACTAATATTGAGCTAGCTAGCAAGTAGCTTAATTTGCTCAACAAGAGTTAGTCTAAATCTTTAATTAGCTTATCAAACAGAGCTACCTAGCTAGCACTAGCACTAGCACTAGCACTGCGCATATGGGGAGAACACCTTGTTGTGAGAAGAATGGCCTCAAGAAAGGGCCATGGACAACAGAGGAGGATCAAAAACTCATTGGTTACATTCAAAAACATGGATACGGAAACTGGAGGACACTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGGTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCGTTTTTCATTTGAAGAGGAGGAGACAATAATTCAGCTACACAGCATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGGTTACCAGGGAGGACTGACAATGAAATCAAGAACTATTGGAACACCCACATCAGAAAAAGGCTTCTGAGGATGGGAATTGATCCTGTCACACACAGTCCTAGACTTGACCTCTTGGACCTTTCTTCCATTCTGTATTGCTCATCTCTCTATGGTTCTTCACCATCATCACAAATGAGTAACCTCCAAAGGCTCCTTGGCATGCAGATGCAGCAACAGCCTCTGGTGAACCCAGAGCTTCTCAAGTTGGCTTCCTCACTCATCTCCTCACAGCAACGCCAAGACAACAACAACAACCTCGACTTACAGAACCAGCCCTGCATTAATAGTCCCCAAATACAGAACCTCCAATTTCAAGACACTGCAGTTACCACCACATTCAGTACCCCTTGTGTTTCTTCATTCCCTTTGACTCAACCACAATTGGCTGAACTTGAACCCAATGTGGACCCATATGATCCATCCAGTTTCACCGACCTTACTGATTGGCATAAAAATGGGATTGCTCTAAGCACACTAACAGATGAGTTCTATAATATCCCTGATCAATTATCAAGCTATATTAATTATTATAGTTCTGATAATAATCAAAATCTCGTGTATCAATCATCAAACTTCCAAAATTCCNATAACAGCAACCAGTTCCTATCGACGTCTACACCATCGTCTAGTCCCACACCGCTGAATTCGAACTCCACGTATATGAATGGGAGCATTAATAACACGGAAGATGAGCGAGAAAGCTATGACAGTGGTAACGGGTTGAGATTTGAAATCCCATNAGATAATATTTTTGATGCCAATGAGTTCATGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00122	260938	262500	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000122s00010218.1	PF00249.26	Myb_DNA-binding	14	61	5.50E-15
Glyur000122s00010218.1	PF00249.26	Myb_DNA-binding	67	111	8.90E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.055
SRR1783600	control	1.032
SRR1783602	moderate drought stress	1.086
SRR1811619	moderate drought stress	1.209

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.082
DRR006520	Root Summer glycyrrhizin high producing strain	0.139
DRR006521	Root Winter glycyrrhizin high producing strain	1.354
DRR006522	Root Winter glycyrrhizin high producing strain	1.405
DRR006523	Root Summer glycyrrhizin low producing strain	0.167
DRR006524	Root Summer glycyrrhizin low producing strain	0.167
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.939
SRR2868004	Drought Stress(Tissue:root)	1.117
SRR2967015	Control (Tissue:root)	1.881

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.199
SRR9715740	Leave	1.691
SRR9715741	Leave	1.327
SRR9715739	Root	0.706
SRR9715742	Root	0.886
SRR9715743	Root	0.488

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.995
SRR8749029	MeJA induced 9h	0.139
SRR8749030	Uninduced	1.183
SRR8749031	Uninduced	1.223
SRR8749032	Uninduced	0.555

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.271
SRR8400027	Control-Root	4.753