Gene detail information of Glyur000122s00010231.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61340.1 | 9.00E-21 | F-box family protein |
| NR | AFK39960.1 | 3.07E-50 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8GX77|FB316_ARATH | 1.00E-24 | F-box protein At1g61340 |
| trEMBL | tr|I3SI68|I3SI68_LOTJA | 1.00E-50 | Uncharacterized protein {ECO:0000313|EMBL:AFK39960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 312951 | 313834 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.168 |
| SRR1783600 | control | 0.147 |
| SRR1783602 | moderate drought stress | 0.059 |
| SRR1811619 | moderate drought stress | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.337 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.206 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.197 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.340 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.191 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.953 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.125 |
| SRR2967015 | Control (Tissue:root) | 1.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.469 |
| SRR9715740 | Leave | 1.726 |
| SRR9715741 | Leave | 0.987 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.511 |
| SRR9715743 | Root | 0.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.226 |
| SRR8749028 | MeJA induced 9h | 0.092 |
| SRR8749029 | MeJA induced 9h | 0.077 |
| SRR8749030 | Uninduced | 1.193 |
| SRR8749031 | Uninduced | 1.830 |
| SRR8749032 | Uninduced | 1.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.646 |
| SRR8400027 | Control-Root | 1.155 |