Gene detail

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Gene detail information of Glyur000123s00008405.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29060.1	1.00E-158	GRAS family transcription factor
NR	XP_004486993.1	0	PREDICTED: uncharacterized protein LOC101504630 [Cicer arietinum]
Swissprot	tr\|Q9XE58\|SCL14_ARATH	0	Scarecrow-like protein 14
trEMBL	tr\|K7LTB4\|K7LTB4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G06630.2}

Sequence

Transcript Sequence

>Glyur000123s00008405.1
ATGGATCCAAGCTTTCCTGAAGCAAGCAATTTCACAAACGGCTACAACTTTGGTGAAGAAGGTAGCATACCAGCCACGGGTCCAAATCAAAATCAATACGCAACAAACTGGGATCATGTGTACCAACAATATGGGAATGGGACCCTCCTTGATACCGACCCTCTTGGAATTGGTTTTGCTGCGAATACACAAGGTTCTGTGGAAGACACTGACTTCTCAGAAACCGTCAAGTTCATAAGCCAGATCCTGATGGAAGAAAACGTGGAGCAGAGACCATTCTATGACTCACTGAGCCTCCAAGTCACAGAGAAATCATTCCACGATGCTCTCTTAGACAAGAAACCCCTTTCCCCCAATCAACACCCCTTAGATCTTCAGAGCCATGATAGTGGAACCACCACCACCAGCAACAGCAACAGTTCACAAGATACTCCTTCCCCTGATACCCCTGTATCTGTGCTTGTTGTTGACGACCACGCTTCCTCCTCTCAAGTACCTCCTTATTCAACTAGTGATGGACTGATAGATTTGGATTCTTGTATTACCAACCTGTTGGCACAAAGCATTTTCAGCGATGTAGATTCTGTCTCCCAATTCAGGAGAGGGGTAGAGGAAGCTAGCAAGTTCCTTCCCCCAGGACCTAGTCTCGTGACTGCTCTAGAATCATCATCATTTAATAAGGGTAGTAGAAAGAATCACAAGCGTGAAGAAGGTGGTGATGATAGTAAGGAAGAAGGAGGGAGAAGCAACAAGCAATCAGCAATTGGTGGTGGTGGTGTTGACGAGGGTGAACTATCAGAGATGTTTGATAGAGTGTTGCTCAACGTGGATCACTTGCCACTATGCAAAGGACACGATTGCTTGCAGAATGGACCTGTGAAAGTGGAAACGGAGCAGCAACCACCTTCATCTGATCATGGAGGGAAGGCTCAGAGTCGTCCTAAGAGATCACAAGGAAGGTCAAAGAATAAGGAAACGATTGATTTGAGGACCCTTCTGCTTCTGTGTTCACAAGCAGTGTATGCAAATGACAACAGAACTGCTAATGAGTTACTGAAGCNGATTAAGCAACACTCTTCACCCTTTGGGGATGCATCACAGAGGTTGGCTCATTACTTCGCCAATGGACTCGAGGCACGCCTCGTTGGGGATGGTACAGGTGCACAGATATTCTATTCNTCTCCAAGCTCCAAGAAGATATCTGCTGCTGAGTTCTTGAAAGCTTACCAAGTTCATTTGTCTACTAGCCCATTTAAAAAGTTTGCATATTTCTTTGCAAACAAAATGATCATGAAAACAGCTGCTAAGGCAGAAACACTTCACATTATTGATTTTGGTATCCTATATGGTTTCCAGTGGCCTTTGCTTATCAAGTTTTTATCAAATAGAGATGGTGGACCTCCAAAGCTGAGGATNACAGGGATAGAGTTCCCTTTACCTGGCTTTCGTCCCACCGAGAGAATTGAGGAGACCGGTCNGCGCCTTGCCAACTATTGCAAGCGTTTCAATGTTCAATTTGAGTACAATGCCATAGCATCAAGAAACTGGGAAACAATTCGAGTTGAAGACCTTAAGATAAAGAGCGATGAGGTAGTTGCTGTGAACTGTTTGATGAGGTTTAAGAACTTACTGGATGAGACTATTGAAGTGAACAGCCCCAGAGATGCTGTTCTTNGTTTGATTAGGAAGATAAACCCGGATATTTTCGCTCACTCGATCGTTAATGGATCTTACAATGCGCCTTTCTTTGCCATGCGGTTTAGGGAGGCCATGTTCCATTTTTCTGCCATTTATGACATGTGTGACACTGTCATACCCCGGGAAAACGAGTGGAGGATGATGATTGAGAGGGAAATTGTGGGTAGGGAGGCTATGAATGTGATAGCATGTGAAGGTTTGGAGAGGGTTGAGAGGCCTGAGACATACAAGCAGTGGCAGGTTAGGAATACAAGGGCTGGTTTCAAGCAGCTACCACTGCACCAGGAATTGATGGCCAAATTTAGGACCAAGTTGAGAGAAGGGTACCACAGAGATTTTGTGTTTGATGAAGACAACAACTGGATGCTTCAGGGTTGGAAAGGCCGCATTTTGTATGCTTCCACTTGTTGGACTCAAATCTTTGCATCCAACAACATGCTCTCTACGGATTCCCTTCTGGAGAATTTTCCTGCAGGTTCCGTGAACGGTTGCATGGGTAACCGTCCCATCTCGGTAATTTCGAACCAGAACAACCCCGGAAGTGGGTTNAGGTTGGAAGACTCATCATCATCATCCCCTTCAAGCCATTCTTCAGAATCTGCCACTGATTCTGGTGGTCCTTCCTCTGGCACAAGCTCAAATGGAGAATCTTCAGATAACAGTAAACACTCCAACCCCATCCTCAGATACATAAGCGACATCCTCATGGATGAAGAAGATGACTTGGAGCGCAAACCCTGCATGTTGCAGGATTGTTTGAGACTCCAAGCCGCTGAAAAATCATTCTATGACGTGTTGGGTCGTAGCTACCCAGATGATAATTTTGGTGGTACAAGTAGAACTACTACTAGTTCTGAGAGCTATAGCAGTTGTTACACCACTGATACCTCTCATGAGTCCTCTGATAATTGGCTTAATGGTGCTGGTGATTTTGAGTCTTCTTTCCTTCAAAGATCTCTAGTAGTTGATTCCCAAGATAACCCCTATGGCCATGCCTATGAGGTTCTTGATGGAAGAATACCTTCTGATGATCCATTTAGAGAGACACAACAAGCTGGTGTCTATTTTCCAAATGGAGCTTCTTGGAATTGGAACATGCTTCACTCGCAGCAGCAGAAGAAGCCACAGATGATTGAAGAGAGTACTGTGATGCGGGGTTCCACAGAAGCCAGAGGAACAAGGGAAAAGAGAGGCCATCTTATGAATGATGGTATTTCACATGAAGAAGAAGAAGAAGAAGAGAGAAGTAGCAAGCTTTCAACTGTTTACTATGACGATTCAGAGCCATCAGAGATGTTTGATGAGGTACTGCTTTGTAGTAAGGATGGTAAAAAATGTCCATTTTATGCTAATCATGTAGTACCATCAAGAGGATCTAATGGGAAGACATCATCACGTTCAAAGAAAGGTTCCAACAACAACAAGGGGACGACAAGTCCAAGCACAACGGTGGATTTGTGGACCCTTTTAACCCAATGTGCACAGGCTGTGTCTAGCTATGACCAAAGGAATGCAAGTGAAATACTCAAGCAGATTAGGCTTCATTCTTCACCTCTTGGTGATGGACTCCAACGTTTGGCTCATTACTTTGCCGAAGGCCTTGAGGCACGGTTAGCTGCTGGTAAACCAAAGTATATGCTCCTTCATTCTTCATCTGCTGCAGATATGTTAAAAGCTCACAAAGTATACATCACAGCATATCCATGTTTGAGGATGTCAAATTTCTTGGCTAACCGAACTATACTGAATCTGGTACAAAAGGAAAACAGTNTTCATATCATTGATTTTGGGATCTTCTATGGCTTCCAGTGGCCTTGCCTCATTCAGCGGCTTTCGGAAAGACCCGGTGGGCCTCCAAGGCTTCGGATTACCGGAATTGATCTTCCCCAGTCTGGATTTAGGCCTGCTGAAAGGGTCGAGGAAACGGGACGGCGCCTTGAGAAGTACTGCNAGAGGTTTGGAGTTCCATTTGAGTACAATTGCCTTGCACAGAAATGGGAAACTATAAGACTTGAGGACCTCAAAATTGACAGGGAAGAAGTAACTGTGGTTAACTGTTTGTACAGGTTGAAGCACCTTTCTGATGAAACTGTTACTGTGAACTGTCCCAGGGATGCAGTGTTGAGGTTGATAAGGAGGATTAATCCGAAGATTTTCATACATGGGGTAGTCAATGGAGCTTATAATGCACCGTTTTTTCTGACTCGGTTCAGGGAGGCACTCTTCCACTTCTCATCAATGTTTGATATGTTTGATGCCACTGTTCCTCGTGAAGACCCTTGTAGGTTGATGTTTGAGAGGGGGTTATTTGGGAGAGATGCGGTGAATGCCATAGCTTGTGAAGGGGCAGAGAGGGTTGAAAGGCCAGAGACATACAAGCAGTGGCAGGTTAGGAACCAGAGAGCAGGTTTCAAGCAACTCCCATTGGCCCCGGAACTGTTGAATAGGGTGAAAGAAATGGTGAAGAAGGAATATCATAAAGATTTTATAGTGGATGAGGATGGCAAGTGGGTTTTGCAGGGATGGAAAGGGCGTATTCTTCATGCTATTTCTTGTTGGGTTCCTGCTTAA

Protein Sequence

>Glyur000123s00008405.1
MDPSFPEASNFTNGYNFGEEGSIPATGPNQNQYATNWDHVYQQYGNGTLLDTDPLGIGFAANTQGSVEDTDFSETVKFISQILMEENVEQRPFYDSLSLQVTEKSFHDALLDKKPLSPNQHPLDLQSHDSGTTTTSNSNSSQDTPSPDTPVSVLVVDDHASSSQVPPYSTSDGLIDLDSCITNLLAQSIFSDVDSVSQFRRGVEEASKFLPPGPSLVTALESSSFNKGSRKNHKREEGGDDSKEEGGRSNKQSAIGGGGVDEGELSEMFDRVLLNVDHLPLCKGHDCLQNGPVKVETEQQPPSSDHGGKAQSRPKRSQGRSKNKETIDLRTLLLLCSQAVYANDNRTANELLKXIKQHSSPFGDASQRLAHYFANGLEARLVGDGTGAQIFYSSPSSKKISAAEFLKAYQVHLSTSPFKKFAYFFANKMIMKTAAKAETLHIIDFGILYGFQWPLLIKFLSNRDGGPPKLRXTGIEFPLPGFRPTERIEETGXRLANYCKRFNVQFEYNAIASRNWETIRVEDLKIKSDEVVAVNCLMRFKNLLDETIEVNSPRDAVLXLIRKINPDIFAHSIVNGSYNAPFFAMRFREAMFHFSAIYDMCDTVIPRENEWRMMIEREIVGREAMNVIACEGLERVERPETYKQWQVRNTRAGFKQLPLHQELMAKFRTKLREGYHRDFVFDEDNNWMLQGWKGRILYASTCWTQIFASNNMLSTDSLLENFPAGSVNGCMGNRPISVISNQNNPGSGXRLEDSSSSSPSSHSSESATDSGGPSSGTSSNGESSDNSKHSNPILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDVLGRSYPDDNFGGTSRTTTSSESYSSCYTTDTSHESSDNWLNGAGDFESSFLQRSLVVDSQDNPYGHAYEVLDGRIPSDDPFRETQQAGVYFPNGASWNWNMLHSQQQKKPQMIEESTVMRGSTEARGTREKRGHLMNDGISHEEEEEEERSSKLSTVYYDDSEPSEMFDEVLLCSKDGKKCPFYANHVVPSRGSNGKTSSRSKKGSNNNKGTTSPSTTVDLWTLLTQCAQAVSSYDQRNASEILKQIRLHSSPLGDGLQRLAHYFAEGLEARLAAGKPKYMLLHSSSAADMLKAHKVYITAYPCLRMSNFLANRTILNLVQKENSXHIIDFGIFYGFQWPCLIQRLSERPGGPPRLRITGIDLPQSGFRPAERVEETGRRLEKYCXRFGVPFEYNCLAQKWETIRLEDLKIDREEVTVVNCLYRLKHLSDETVTVNCPRDAVLRLIRRINPKIFIHGVVNGAYNAPFFLTRFREALFHFSSMFDMFDATVPREDPCRLMFERGLFGRDAVNAIACEGAERVERPETYKQWQVRNQRAGFKQLPLAPELLNRVKEMVKKEYHKDFIVDEDGKWVLQGWKGRILHAISCWVPA

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	20556	31367	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008405.1	PF03514.9	GRAS	329	704	1.00E-107
Glyur000123s00008405.1	PF03514.9	GRAS	1054	1419	1.60E-112

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.324
SRR1783600	control	10.326
SRR1783602	moderate drought stress	13.124
SRR1811619	moderate drought stress	12.993

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.981
DRR006520	Root Summer glycyrrhizin high producing strain	20.416
DRR006521	Root Winter glycyrrhizin high producing strain	24.643
DRR006522	Root Winter glycyrrhizin high producing strain	23.894
DRR006523	Root Summer glycyrrhizin low producing strain	28.889
DRR006524	Root Summer glycyrrhizin low producing strain	28.837
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.120

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	14.826
SRR2868004	Drought Stress(Tissue:root)	25.857
SRR2967015	Control (Tissue:root)	32.840

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	19.590
SRR9715740	Leave	24.252
SRR9715741	Leave	23.618
SRR9715739	Root	25.672
SRR9715742	Root	45.401
SRR9715743	Root	43.330

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.601
SRR8749028	MeJA induced 9h	20.010
SRR8749029	MeJA induced 9h	6.682
SRR8749030	Uninduced	4.031
SRR8749031	Uninduced	1.699
SRR8749032	Uninduced	2.805

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	26.332
SRR8400027	Control-Root	39.024