Gene detail

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Gene detail information of Glyur000123s00008412.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29040.1	1.00E-149	Exostosin family protein
NR	XP_009364431.1	0	PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Pyrus x bretschneideri]
Swissprot	tr\|Q7XJ98\|KATAM_ARATH	1.00E-178	Xyloglucan galactosyltransferase KATAMARI1
trEMBL	tr\|A0A067L1I3\|A0A067L1I3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42257.1}

Sequence

Transcript Sequence

>Glyur000123s00008412.1
ATGAGACGCTGCTATGTTCAAAAGGAGATGGAAAAATCGACCACCGGCAAATGCCACAACAGGTTCTGGTTCGTCGTTTTAGCCTCTTCCTTTGGATGGTTGCTATGTTACGCATATTTCACGGTTCTAAAGGCCGAATTCGATAACACACTCTTCATCTTTTTGGGCCATAGTTTTGCCAATACCGCACAGTTTCACGGATCTACCCATTACCATAAGATTAAGAGCATTCATGTTACTGCTAGGGACTCTGTTACAAACATGAAAAGCATCGAGTATGCGAAAAAACACGCAAACATTGGTATGACAAAAAAACATAAAGAGAAACACAAAAAAGCCCTGCCTCACGGGATCGAAAATGTTGGTCGATTCCCATTGAAAGAAAAACAGTTTTCCATAGATAAGGTTGGTTCAAAATCCGGTAATCCGTGTACTGGACGGTACATATACATTCACAAGCTACCTAGTCGATTCAACGAGGACATGGTGAAAAATTGCGCTTCACTTGATCCCTGGACAAACATGTGTAACTCCACCACAAACCTTGGACTTGGTCCTGTTCTTTCTTCGAATGGCTGGTTCGCAACGCATCAGTTCTTATTAGAAGTCATTTTCCACAACAAAATGAGGAACTACGAGTGCTTAACAAACGACTCATCAATGGCCTCAGCGATTTACGTCCCTTACTACGCTGGCCTTGATCTTTCACGTTACCTTTGGTTCCCCAACGCATCAATGAGAGACGCGGGTTCCCTCGATCTCGTTAAGTGGCTAAGAGAAAAACCCGAGTGGGGAAAAATGTATGGAAGGGATCACTTCATGGTTGCGGGTAGAATCACTTGGGATTTCAGAAGACCCAAAAAGTATTCTTCCAATGGTTGGGGGAACCAGCTTTTGATGCTACCAGAGACCAAGAACATGACGGTTCTAGTGATTGAGAAAAGCCCCTGGAACAACAACGATTTCGCGATACCATACCCAACCTACTTTCACCCTTCCAAGGTTGACCAAGTGTTTGACTGGCAGAGGAAAATGATGGGGCACCATAAAAGAAGAGTCTTGTTCTGTTTTGCTGGTGCCCCACGTCCCGGTCGCAAGGACTCCATAAGGGGTCACATATTTGAGCAGTGTCGTGTTGCGGGGAAGAAGAACAAGTGTGAGATGGTGGAATGTGAGGTTCGTGAAGAGAGCAAGTGCCATCAACCGGGTTATGTGATGGAAGTGTTCCAGAGCTGTGATTTCTGCTTACAACCACCGGGTGATTCATACACGAGGAGGTCTATTTTTGATTCCATGTTGGCAGGGTGTATACCTGTTTTCTTTCATCCTGGTTCTGCTTATGTTCAATATTTGTGGCATTTACCAAAAGATTATACAAAGTACTCGGTGTTCATATCCCAAAAGGATGTTCAAGATGGGAAGGTGAGCATTGAGGGGGTACTGAGCCGAATTCCTAAGGCCAAGGTGAGGTCTATNAGAGCTGAGGTTGTGAAGCTGATACCAAGGATAGTGTATGCAGACCCGAGATTTAGATTGGATGCTGTTGAGGATGCATTTGATGTTACAATTAAGAGAGTCCTTGAGAGAGTAGAGAAGTCGAGGGATGGGGTGGATTCTGGTTTGAATGCTGCAGAGGAATTAACTTGGAAGTATAGTTTGTCTGGGACAATAGGTGAACATAGATGGGGCAGTTTCTTTCTGAGAAAAGCTGGATAATGAACATATGTATTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	59046	60777	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008412.1	PF03016.10	Exostosin	144	484	4.70E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.548
SRR1783600	control	0.531
SRR1783602	moderate drought stress	0.506
SRR1811619	moderate drought stress	0.445

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.743
DRR006520	Root Summer glycyrrhizin high producing strain	6.564
DRR006521	Root Winter glycyrrhizin high producing strain	0.064
DRR006522	Root Winter glycyrrhizin high producing strain	0.063
DRR006523	Root Summer glycyrrhizin low producing strain	3.653
DRR006524	Root Summer glycyrrhizin low producing strain	3.700
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.805
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.910

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.789
SRR2868004	Drought Stress(Tissue:root)	0.520
SRR2967015	Control (Tissue:root)	0.544

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.681
SRR9715740	Leave	2.526
SRR9715741	Leave	1.329
SRR9715739	Root	1.691
SRR9715742	Root	2.058
SRR9715743	Root	1.957

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.424
SRR8749028	MeJA induced 9h	14.028
SRR8749029	MeJA induced 9h	4.951
SRR8749030	Uninduced	4.088
SRR8749031	Uninduced	2.459
SRR8749032	Uninduced	2.985

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.566
SRR8400027	Control-Root	1.280