Gene detail

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Gene detail information of Glyur000123s00008423.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45910.1	2.00E-139	U-box domain-containing protein kinase family protein
NR	XP_006590986.1	0	PREDICTED: U-box domain-containing protein 33-like [Glycine max]
COG	YP_007834776.1	1.00E-20	Serine/threonine protein kinase [Megamonas hypermegale ART12/1]
Swissprot	tr\|Q8GUH1\|PUB33_ARATH	8.00E-164	Serine/threonine-protein kinase
trEMBL	tr\|K7LPP0\|K7LPP0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G14860.2}

Sequence

Transcript Sequence

>Glyur000123s00008423.1
CAACATATGACACACACACACAAGAGATAGAAGAGAGACTCCACACGCCATGAGGTCAGTGCAAAAGTCAAGCCTCCCTCCTTGGAGTAGTTCGAAAGGAGAATTATCACTGAAAATCCCATCAATTAAAAAAATAAAGGGGATTGAAGTTTCTCATTGATCCTATTGCCACTTGCCACGCCCACTTCCCCTCCTTCAACAATGAAGCTTTCGAGTCTTCCTCACCATCATCACGACGATGTACTCACCACCAGAGACACCCTTCATAATCATGGCTTCTAACCACACGGGCTCACCATGGAAGAATGTGATTGTGATGAGACGGTGCACGTAGCAGTTGGGAAGTCGGTGAAGAAAGCTGCAACTTTGCTTCAATGGAGTTTCACCCAGTTTAGGAACACACACATTCGCTTACTTCATGTTTACCAACCTTCTACTATGATCCCCACACTATTAGGAAAATTGCCAGCNTCGCAAGCTAATCCTGAAGTGGTGTCTGCTTTTAGAATAGAAGAAAGAGAACAGACCATGAAGCTTTTGGAGAAGTACCTGAGCATTTGCCGAGTAGCTAAGGTTAAGGCAAGCAGTGTCGTAGGTGAAGCTGATCAAGTCCAGAAAGGGATTGTTGATTTGGTTACTAGGCACAATATCAGGAAGCTTGTTATTGGAGCAATACCAGAGAATTGCATGAAAGCCAAAAGGAATTCCAGTAAAGCAAATTATGCTNCCAAACATGCCCCCCCATTCTGTGAGATATGGTTTATATATAAAGGTAAACACATTTGGACAAGAGAAACTTCTGAAACTCCNCATCCCTTGTCTTCATATGCTCAATCTGAGACTACAACTTTAGAAAGCGTAAGTTGTAGATCTATTCAACATGGAATGAATGAAATTTTCCATTCAGAATGTCTTCAATCACATTCTATAAGACCCACAGTAAGTACTGGATCTGGATGTTTGGTTCAGAGTGAAATCATTGAAACAGAAGCCATGTTTTCATCCAAATCATCCTGTTGCAGTAGTCATTGTTCTTCCCAAAATTCTGCCAGGAGCTGTTTAGATACTCATTCAGAGGTTGAGGAAGAAATAGTTAATAGTCAACATATTGAAGCCAAAAGAGAAGCTGATACAGCAATAGATGAGGCCTTTGCAGAGAAGTTAAAGTGTAAAAGGTTGGAAGTCAAAGCCTTTGAGGCCATAAATAAGGTCAACTTGTTTGAATCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGCTGCAGTACAGGAGCGACAGAAGTTATTGAATGAGAAAGAAGAAATTGCTAGTGAGCTACAAAGGACCATGAGAAGTATTTCCCTTCTAGACAGCTGTGCACAGGAAACCAACCATAGACAACATGAAGCTGCTGATGAACTATCACTAATTCAAGCATCCATCTCAAACCTGTGGAATGAAAAGCAACAGATCAGGCGGCAGAAAATGGAAGCCTTACACTGGCTTGAGCGGTGGAAAAGTCGCGAACAAGTTGGAACAGCTCACTGGAATGGGGTCATTGGGTTTGCTGAAGAATTCCCTGAGCTAGCAGAATTTTCATTAACGGATCTTCAAAATGCCACATGCAATTTTTCTGAGAGCTTCAAATTTCGGCAGGGTGGATATGGTTCTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATAAGGAAGCTCCATCCACATAACATGCAAGGGCCAGCAGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTTTTGACTTTGCTTGGTTTTTGCTCTGAAGCCTGGTCGCTTGTATATGAGTACTTGCCCAATGGAAGTCTCCAAGACTACCTATTCCGAAAAAGCAGTCTCCCCCCTTTGACATGGAATATCCGAGTGCGATGGATTGCTGAAATTGCAAAAGCTCTCTGCTTCTTGCATTCTTCCAAACCTGAAACTATTGTCCATGGTGATCTGAAGCTTGAAACTGTCCTCCTTGATTCTGCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTGGTGACAGACGAGTCACTCTGTCTTCCTAGTTTCCGCTTCAGTACTGAACCAAAGGGTTCTTTCACATATACAGATCCAGAGTTTCAGAGAACTGGAGTATTAACAACTAAGTCTGACATATACTCTTTTGGGCTCATCATTTTGCAACTCCTCACTGGTAGGACTGTAGTTGGATTAGCTGGTGAAGTACGCAAAGCAGTTTCATGTGGAAAATTGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGCATTCCACTGTGGCAACACAATTGGTTGAACTAGGATTGCAATGCTGCCGACAAAATAGTAGAGACAGACCAGAGTTAACACCTTGTCTAGTGAGAGAATTGGAGCAGTTGCATATCTCAGAAGAGCGACCTGTGCCATCTTTTTTCTTGTGTCCAATCCTTCAGGAAATAATGTACGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAGGGAAGGCCATAAGTGAATGGTTGGAAAATGGGCACGAAAGTTCTCCCATGACTAATTTAAAATTGAGTCACCTGCATCTTACTTCCAATCATGCACTTCGACTTGCTATCCAAGGCTGGCTTTGCAAATCTTGAAGTTTCATTAATTCATTTATGTATGTTGTAAATATCTCATATCTATTTTTGTGTAATTGCATTGCCTTTCTTAGATTCCTAGATCAAATTAGTCATTGTTAAGCGTTTAATGATATGAAGTTAGTTGGTTTGCTGTTGTTTATGCTTTCCTGAATCAGTCAGATACATCCAGACTGACTCATTGTACAGTCAAAATTGCAGCTGGAGAGCTTATAGAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	115007	119915	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.14.2
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0016567 protein ubiquitination

molecular_function GO:0004672 protein kinase activity GO:0004842 ubiquitin-protein transferase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008423.1	PF07714.12	Pkinase_Tyr	453	703	7.30E-34
Glyur000123s00008423.1	PF04564.10	U-box	719	788	3.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.234
SRR1783600	control	6.214
SRR1783602	moderate drought stress	5.306
SRR1811619	moderate drought stress	5.227

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.744
DRR006520	Root Summer glycyrrhizin high producing strain	6.688
DRR006521	Root Winter glycyrrhizin high producing strain	15.075
DRR006522	Root Winter glycyrrhizin high producing strain	14.725
DRR006523	Root Summer glycyrrhizin low producing strain	5.839
DRR006524	Root Summer glycyrrhizin low producing strain	5.796
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.057
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.872

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.464
SRR2868004	Drought Stress(Tissue:root)	7.748
SRR2967015	Control (Tissue:root)	8.065

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	14.916
SRR9715740	Leave	20.368
SRR9715741	Leave	15.888
SRR9715739	Root	1.068
SRR9715742	Root	6.985
SRR9715743	Root	6.174

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.765
SRR8749028	MeJA induced 9h	8.562
SRR8749029	MeJA induced 9h	4.823
SRR8749030	Uninduced	4.810
SRR8749031	Uninduced	1.887
SRR8749032	Uninduced	1.340

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	13.087
SRR8400027	Control-Root	12.365