Gene detail information of Glyur000123s00008425.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G28840.11.00E-173XB3 ortholog 1 in Arabidopsis thaliana
NRXP_004505868.10PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like isoform X1 [Cicer arietinum]
COGYP_006705297.12.00E-21Ankyrin 2,3/unc44 [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
Swissprottr|Q94B55|XB31_ARATH0Putative E3 ubiquitin-protein ligase XBAT31
trEMBLtr|I1LK31|I1LK31_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14900.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00123131388134930-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000123s00008425.1PF00023.25Ank49760.0011
Glyur000123s00008425.1PF12796.2Ank_2841851.70E-19
Glyur000123s00008425.1PF13857.1Ank_51952352.60E-09
Glyur000123s00008425.1PF13920.1zf-C3HC4_33183731.70E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.428
SRR1783600control9.424
SRR1783602moderate drought stress12.007
SRR1811619moderate drought stress12.336

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.096
DRR006520Root Summer glycyrrhizin high producing strain33.111
DRR006521Root Winter glycyrrhizin high producing strain1.483
DRR006522Root Winter glycyrrhizin high producing strain1.413
DRR006523Root Summer glycyrrhizin low producing strain17.491
DRR006524Root Summer glycyrrhizin low producing strain17.447
DRR006525Leaf Summer glycyrrhizin high producing strain6.496
DRR006526Leaf Summer glycyrrhizin high producing strain6.572

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.172
SRR2868004Drought Stress(Tissue:root)19.100
SRR2967015Control (Tissue:root)13.300

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.086
SRR9715740Leave8.015
SRR9715741Leave7.643
SRR9715739Root7.494
SRR9715742Root10.907
SRR9715743Root10.401

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.987
SRR8749028MeJA induced 9h7.770
SRR8749029MeJA induced 9h8.105
SRR8749030Uninduced3.048
SRR8749031Uninduced1.976
SRR8749032Uninduced0.940

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.565
SRR8400027Control-Root21.511

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved