Gene detail information of Glyur000123s00008428.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46510.10plant U-box 13
NRKEH30143.10armadillo/beta-catenin repeat protein [Medicago truncatula]
COGYP_001957949.18.00E-16hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9SNC6|PUB13_ARATH0U-box domain-containing protein 13
trEMBLtr|A0A072UM21|A0A072UM21_MEDTR0Armadillo/beta-catenin repeat protein {ECO:0000313|EMBL:KEH30143.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00123146088151298+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000123s00008428.1PF04564.10U-box2563268.90E-21
Glyur000123s00008428.1PF00514.18Arm3834228.30E-08
Glyur000123s00008428.1PF00514.18Arm4665041.50E-07
Glyur000123s00008428.1PF00514.18Arm5485872.50E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control44.078
SRR1783600control44.288
SRR1783602moderate drought stress49.144
SRR1811619moderate drought stress48.908

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain77.595
DRR006520Root Summer glycyrrhizin high producing strain75.919
DRR006521Root Winter glycyrrhizin high producing strain63.347
DRR006522Root Winter glycyrrhizin high producing strain61.246
DRR006523Root Summer glycyrrhizin low producing strain135.925
DRR006524Root Summer glycyrrhizin low producing strain136.623
DRR006525Leaf Summer glycyrrhizin high producing strain39.859
DRR006526Leaf Summer glycyrrhizin high producing strain39.480

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.712
SRR2868004Drought Stress(Tissue:root)64.922
SRR2967015Control (Tissue:root)72.483

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave109.518
SRR9715740Leave81.253
SRR9715741Leave113.480
SRR9715739Root48.673
SRR9715742Root137.069
SRR9715743Root126.818

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h58.938
SRR8749028MeJA induced 9h69.924
SRR8749029MeJA induced 9h63.652
SRR8749030Uninduced99.833
SRR8749031Uninduced90.226
SRR8749032Uninduced66.570

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root38.981
SRR8400027Control-Root63.184

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved