Gene detail information of Glyur000123s00008437.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G59300.19.00E-73ubiquitin carrier protein 7
NRNP_001237657.18.60E-116uncharacterized protein LOC100499900 [Glycine max]
COGYP_008797956.19.00E-13ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q42540|UBC7_ARATH2.00E-102Ubiquitin-conjugating enzyme E2 7
trEMBLtr|C6SXY4|C6SXY4_SOYBN3.00E-116Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G06960.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00123212990216625+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10575UBE2G1, UBC7 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Parkinson's diseasemap05012


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000123s00008437.1PF00179.21UQ_con111606.60E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control132.418
SRR1783600control132.901
SRR1783602moderate drought stress155.188
SRR1811619moderate drought stress154.214

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain112.506
DRR006520Root Summer glycyrrhizin high producing strain111.798
DRR006521Root Winter glycyrrhizin high producing strain263.532
DRR006522Root Winter glycyrrhizin high producing strain256.765
DRR006523Root Summer glycyrrhizin low producing strain150.685
DRR006524Root Summer glycyrrhizin low producing strain150.504
DRR006525Leaf Summer glycyrrhizin high producing strain20.998
DRR006526Leaf Summer glycyrrhizin high producing strain20.679

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)107.792
SRR2868004Drought Stress(Tissue:root)111.570
SRR2967015Control (Tissue:root)115.081

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.179
SRR9715740Leave49.194
SRR9715741Leave50.726
SRR9715739Root172.207
SRR9715742Root99.501
SRR9715743Root106.598

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h106.282
SRR8749028MeJA induced 9h78.309
SRR8749029MeJA induced 9h126.814
SRR8749030Uninduced74.003
SRR8749031Uninduced94.060
SRR8749032Uninduced188.127

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root130.124
SRR8400027Control-Root140.603

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved