Gene detail information of Glyur000123s00008441.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46440.20UDP-XYL synthase 5
NRAFK35834.10unknown [Lotus japonicus]
COGYP_007108422.11.00E-164NAD-dependent epimerase/dehydratase [Geitlerinema sp. PCC 7407]
Swissprottr|Q9SN95|UXS5_ARATH0UDP-glucuronic acid decarboxylase 5
trEMBLtr|I3S6E2|I3S6E2_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK35834.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00123228502239901+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08678UXS1, uxs EC:4.1.1.35 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0050662  coenzyme binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000123s00008441.1PF01370.16Epimerase352699.70E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.396
SRR1783600control34.121
SRR1783602moderate drought stress26.029
SRR1811619moderate drought stress24.917

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain83.951
DRR006520Root Summer glycyrrhizin high producing strain82.780
DRR006521Root Winter glycyrrhizin high producing strain43.871
DRR006522Root Winter glycyrrhizin high producing strain40.216
DRR006523Root Summer glycyrrhizin low producing strain43.032
DRR006524Root Summer glycyrrhizin low producing strain45.378
DRR006525Leaf Summer glycyrrhizin high producing strain43.699
DRR006526Leaf Summer glycyrrhizin high producing strain43.287

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)139.471
SRR2868004Drought Stress(Tissue:root)99.437
SRR2967015Control (Tissue:root)94.816

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave60.851
SRR9715740Leave37.199
SRR9715741Leave33.979
SRR9715739Root25.147
SRR9715742Root45.839
SRR9715743Root44.838

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h75.045
SRR8749028MeJA induced 9h102.901
SRR8749029MeJA induced 9h87.682
SRR8749030Uninduced64.333
SRR8749031Uninduced26.282
SRR8749032Uninduced23.291

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root111.279
SRR8400027Control-Root130.890

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved