Gene detail

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Gene detail information of Glyur000123s00008441.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46440.2	0	UDP-XYL synthase 5
NR	AFK35834.1	0	unknown [Lotus japonicus]
COG	YP_007108422.1	1.00E-164	NAD-dependent epimerase/dehydratase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q9SN95\|UXS5_ARATH	0	UDP-glucuronic acid decarboxylase 5
trEMBL	tr\|I3S6E2\|I3S6E2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK35834.1}

Sequence

Transcript Sequence

>Glyur000123s00008441.2
TTATTTTTTCTCTCCAAGTTATTGAAAAAGAAAAAATATAGTTTTGCGTTTGGTGGGGGAAATTCCAAGTTCTGGATCTTCTTTATTCTATAAAATGGTGTTTTGATTACCAGTACCACAACTGTGATTTGGGGTCCTGATTTGTCTTTCACTGCTTAAGTTCACGAATCAGGATTTGAATTTCAGAGATTTTGACAATGGCAACGAATTCTTCTAATGGAGACCACCAAAAGGCTTCAAAGCAACCTCCCTTGCCATCTCCCTTGCGTTTTTCCAAGTTCTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGGTTCATTGGCTCTCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTTCTTCACTGGATCTAAAGACAACCTTAGAAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCACGATGTCACGGAACAACTGCTGATTGAGGTTGATCAAATCTACCATCTTGCATGCCCGGCTTCTCCAATTTTCTACAAATACAATCCTGTAAAGACAATAAAGACAAATGTGATTGGAACATTGAACATGCTTGGGCTTGCCAAGCGTGTGGGTGCAAGGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTAGCAGAAACTTTGATGTTTGATTACCACAGGCAGCATGGAATAGAAATACGCATTGCAAGAATCTTCAATACATATGGACCACGCATGAATATTGATGATGGCCGTGTTGTCAGCAACTTCATTGCTCAAGCAATACGTGGTGAACCCTTAACAGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTACGTCTCTGACATGGTCGATGGCCTTATTCGTCTAATGGAAGGGGAAGACACCGGTCCAATCAACATTGGGAACCCAGGTGAGTTTACAATGACCGAACTTGCCGAGACCGTGAAAGAGCTTATTAATCCAGCTGTGGAGATAAAGATGGTAGAGAACACTCCCGATGATCCGCGTCAGAGAAAACCAGACATAACAAAAGCAAAGGAGTTNCTTGGCTGGGAACCAAAGGTCAAGTTGAGGGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTCTGAGGCTTGGGGTTGCCAAGAACAACTAAGCTTTGTTTTTACTCCTTCACTTCATGTCAAAATGGATATTTTTTATAGTCACTTGGATGAGTCTGTTTGTTAGTGTTAGATATTTCGTATTGAAATGAAAAATCATGGTGAGGAAGGTTGGAAGTTGCTAATAGGAANGCGAACTTGAACTTGCCCTTCAATTGGTATTGGTACTATATGCTTAGTCTCTACCCAACTTCTCTTGGAAATGCTATATTGTTAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00123	228502	239901	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08678	UXS1, uxs	EC:4.1.1.35	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000123s00008441.2	PF01370.16	Epimerase	35	269	9.70E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.396
SRR1783600	control	34.121
SRR1783602	moderate drought stress	26.029
SRR1811619	moderate drought stress	24.917

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	83.951
DRR006520	Root Summer glycyrrhizin high producing strain	82.780
DRR006521	Root Winter glycyrrhizin high producing strain	43.871
DRR006522	Root Winter glycyrrhizin high producing strain	40.216
DRR006523	Root Summer glycyrrhizin low producing strain	43.032
DRR006524	Root Summer glycyrrhizin low producing strain	45.378
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.699
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.287

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	139.471
SRR2868004	Drought Stress(Tissue:root)	99.437
SRR2967015	Control (Tissue:root)	94.816

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	60.851
SRR9715740	Leave	37.199
SRR9715741	Leave	33.979
SRR9715739	Root	25.147
SRR9715742	Root	45.839
SRR9715743	Root	44.838

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	75.045
SRR8749028	MeJA induced 9h	102.901
SRR8749029	MeJA induced 9h	87.682
SRR8749030	Uninduced	64.333
SRR8749031	Uninduced	26.282
SRR8749032	Uninduced	23.291

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	111.279
SRR8400027	Control-Root	130.890