Gene detail information of Glyur000123s00008456.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46080.13.00E-23C2H2-type zinc finger family protein
NRKHN21982.13.73E-41Zinc finger protein ZAT8 [Glycine soja]
Swissprottr|Q9LX85|ZAT8_ARATH2.00E-28Zinc finger protein ZAT8
trEMBLtr|I1LK59|I1LK59_SOYBN9.00E-41Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G15140.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00123276641277090-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2
EAR motif-containing ProteinsC2H2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000123s00008456.1PF13912.1zf-C2H2_646703.50E-06
Glyur000123s00008456.1PF13912.1zf-C2H2_6911152.20E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.077
SRR1783600control1.307
SRR1783602moderate drought stress0.506
SRR1811619moderate drought stress0.521

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.466
DRR006520Root Summer glycyrrhizin high producing strain0.475
DRR006521Root Winter glycyrrhizin high producing strain1.138
DRR006522Root Winter glycyrrhizin high producing strain1.210
DRR006523Root Summer glycyrrhizin low producing strain0.736
DRR006524Root Summer glycyrrhizin low producing strain1.229
DRR006525Leaf Summer glycyrrhizin high producing strain0.712
DRR006526Leaf Summer glycyrrhizin high producing strain1.236

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.213
SRR2868004Drought Stress(Tissue:root)0.192
SRR2967015Control (Tissue:root)1.354

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.883
SRR9715740Leave2.236
SRR9715741Leave2.843
SRR9715739Root10.508
SRR9715742Root1.592
SRR9715743Root6.292

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h159.935
SRR8749028MeJA induced 9h132.756
SRR8749029MeJA induced 9h216.426
SRR8749030Uninduced35.182
SRR8749031Uninduced10.322
SRR8749032Uninduced36.407

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.335
SRR8400027Control-Root0.609

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved