Gene detail information of Glyur000123s00008465.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46130.12.00E-58myb domain protein 48
NRXP_003606618.15.99E-109MYB transcription factor [Medicago truncatula]
Swissprottr|Q9LX82|MYB48_ARATH3.00E-77Transcription factor MYB48
trEMBLtr|G7JTP3|G7JTP3_MEDTR2.00E-109Myb transcription factor {ECO:0000313|EMBL:AES88815.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00123325095326297+


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB
EAR motif-containing ProteinsMYB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000123s00008465.1PF00249.26Myb_DNA-binding23702.20E-12
Glyur000123s00008465.1PF00249.26Myb_DNA-binding761213.00E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control47.188
SRR1783600control47.144
SRR1783602moderate drought stress131.056
SRR1811619moderate drought stress130.600

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.129
DRR006520Root Summer glycyrrhizin high producing strain19.848
DRR006521Root Winter glycyrrhizin high producing strain19.608
DRR006522Root Winter glycyrrhizin high producing strain20.128
DRR006523Root Summer glycyrrhizin low producing strain21.798
DRR006524Root Summer glycyrrhizin low producing strain22.656
DRR006525Leaf Summer glycyrrhizin high producing strain5.850
DRR006526Leaf Summer glycyrrhizin high producing strain5.844

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)103.939
SRR2868004Drought Stress(Tissue:root)173.752
SRR2967015Control (Tissue:root)156.999

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.643
SRR9715740Leave16.713
SRR9715741Leave38.131
SRR9715739Root4.055
SRR9715742Root16.752
SRR9715743Root14.808

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.644
SRR8749028MeJA induced 9h8.132
SRR8749029MeJA induced 9h2.457
SRR8749030Uninduced0.110
SRR8749031Uninduced0.022
SRR8749032Uninduced0.089

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root87.195
SRR8400027Control-Root35.802

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved