Gene detail information of Glyur000123s00008467.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59770.1 | 5.00E-31 | Protein-tyrosine phosphatase-like, PTPLA |
| NR | KHN21987.1 | 3.45E-66 | 3-hydroxyacyl-CoA dehydratase 2 [Glycine soja] |
| trEMBL | tr|I3S6U2|I3S6U2_LOTJA | 3.00E-66 | Uncharacterized protein {ECO:0000313|EMBL:AFK35984.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00123 | 328116 | 330189 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10703 | PHS1, PAS2 | EC:4.2.1.134 | Fatty acid metabolism | map01212 |
| Fatty acid elongation | map00062 | |||
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000123s00008467.1 | PF04387.9 | PTPLA | 18 | 161 | 3.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.360 |
| SRR1783600 | control | 3.110 |
| SRR1783602 | moderate drought stress | 4.467 |
| SRR1811619 | moderate drought stress | 4.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.639 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.482 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.383 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.259 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.278 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.392 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.854 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.315 |
| SRR2967015 | Control (Tissue:root) | 2.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.412 |
| SRR9715740 | Leave | 9.543 |
| SRR9715741 | Leave | 5.492 |
| SRR9715739 | Root | 3.983 |
| SRR9715742 | Root | 1.578 |
| SRR9715743 | Root | 1.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.755 |
| SRR8749028 | MeJA induced 9h | 1.719 |
| SRR8749029 | MeJA induced 9h | 2.067 |
| SRR8749030 | Uninduced | 0.372 |
| SRR8749031 | Uninduced | 0.425 |
| SRR8749032 | Uninduced | 0.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.258 |
| SRR8400027 | Control-Root | 8.686 |