Gene detail information of Glyur000124s00011940.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G33290.12.00E-127xylogalacturonan deficient 1
NRXP_003549738.10PREDICTED: probable glycosyltransferase At3g42180-like [Glycine max]
COGYP_677520.11.00E-07hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406]
Swissprottr|Q94AA9|XGD1_ARATH6.00E-160Xylogalacturonan beta-1,3-xylosyltransferase
trEMBLtr|I1MU43|I1MU43_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G11850.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001245412959983+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT47


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000124s00011940.1PF03016.10Exostosin423041.20E-48
Glyur000124s00011940.1PF03016.10Exostosin4887582.50E-62


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.044
SRR1783600control15.847
SRR1783602moderate drought stress19.308
SRR1811619moderate drought stress19.272

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.266
DRR006520Root Summer glycyrrhizin high producing strain17.966
DRR006521Root Winter glycyrrhizin high producing strain9.799
DRR006522Root Winter glycyrrhizin high producing strain9.413
DRR006523Root Summer glycyrrhizin low producing strain14.023
DRR006524Root Summer glycyrrhizin low producing strain13.909
DRR006525Leaf Summer glycyrrhizin high producing strain3.231
DRR006526Leaf Summer glycyrrhizin high producing strain3.091

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.939
SRR2868004Drought Stress(Tissue:root)26.286
SRR2967015Control (Tissue:root)37.290

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.174
SRR9715740Leave7.948
SRR9715741Leave16.782
SRR9715739Root2.032
SRR9715742Root6.885
SRR9715743Root6.315

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.553
SRR8749028MeJA induced 9h4.543
SRR8749029MeJA induced 9h1.564
SRR8749030Uninduced2.041
SRR8749031Uninduced0.644
SRR8749032Uninduced1.834

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.021
SRR8400027Control-Root22.562

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved