Gene detail information of Glyur000124s00011952.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20250.40Raffinose synthase family protein
NRXP_004508462.10PREDICTED: probable galactinol--sucrose galactosyltransferase 6-like isoform X2 [Cicer arietinum]
COGYP_004464004.12.00E-69raffinose synthase [Mahella australiensis 50-1 BON]
Swissprottr|Q8RX87|RFS6_ARATH0Probable galactinol--sucrose galactosyltransferase 6
trEMBLtr|G7JFC4|G7JFC4_MEDTR0Raffinose synthase or seed inhibition protein {ECO:0000313|EMBL:AES91600.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00124141365144659+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH36


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06617E2.4.1.82 EC:2.4.1.82 Galactose metabolism map00052


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000124s00011952.1PF05691.7Raffinose_syn1038255.70E-301


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.628
SRR1783600control12.696
SRR1783602moderate drought stress20.295
SRR1811619moderate drought stress20.239

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain94.249
DRR006520Root Summer glycyrrhizin high producing strain92.871
DRR006521Root Winter glycyrrhizin high producing strain10.983
DRR006522Root Winter glycyrrhizin high producing strain10.688
DRR006523Root Summer glycyrrhizin low producing strain47.581
DRR006524Root Summer glycyrrhizin low producing strain48.427
DRR006525Leaf Summer glycyrrhizin high producing strain18.607
DRR006526Leaf Summer glycyrrhizin high producing strain18.402

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.505
SRR2868004Drought Stress(Tissue:root)74.591
SRR2967015Control (Tissue:root)67.710

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.691
SRR9715740Leave7.616
SRR9715741Leave23.555
SRR9715739Root56.998
SRR9715742Root125.752
SRR9715743Root101.071

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h136.956
SRR8749028MeJA induced 9h306.612
SRR8749029MeJA induced 9h274.475
SRR8749030Uninduced113.571
SRR8749031Uninduced315.473
SRR8749032Uninduced323.943

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.075
SRR8400027Control-Root58.599

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved