Gene detail information of Glyur000125s00010011.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G56400.1 | 8.00E-56 | F-box family protein |
| NR | KEH43363.1 | 2.40E-148 | F-box plant-like protein [Medicago truncatula] |
| Swissprot | tr|Q9C7X8|FBL33_ARATH | 6.00E-63 | Putative F-box/LRR-repeat protein At1g56400 |
| trEMBL | tr|A0A072VPR4|A0A072VPR4_MEDTR | 9.00E-149 | F-box plant-like protein {ECO:0000313|EMBL:KEH43363.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00125 | 71582 | 73465 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000125s00010011.1 | PF00646.28 | F-box | 9 | 45 | 2.60E-05 |
| Glyur000125s00010011.1 | PF08387.5 | FBD | 389 | 437 | 2.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.892 |
| SRR1783600 | control | 0.862 |
| SRR1783602 | moderate drought stress | 0.652 |
| SRR1811619 | moderate drought stress | 0.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.150 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.076 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.075 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.041 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.008 |
| SRR2967015 | Control (Tissue:root) | 0.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.047 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.196 |
| SRR9715739 | Root | 0.121 |
| SRR9715742 | Root | 0.087 |
| SRR9715743 | Root | 0.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.296 |
| SRR8400027 | Control-Root | 0.061 |