Gene detail information of Glyur000125s00010012.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10530.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004496157.1 | 0 | PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Cicer arietinum] |
| COG | YP_001519743.1 | 1.00E-15 | WD repeat-containing protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q9AV81|PRP19_ORYSJ | 4.00E-12 | Pre-mRNA-processing factor 19 {ECO:0000305} |
| trEMBL | tr|I1NHQ5|I1NHQ5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G33160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00125 | 79014 | 84278 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000125s00010012.1 | PF00400.27 | WD40 | 273 | 308 | 5.50E-10 |
| Glyur000125s00010012.1 | PF08149.6 | BING4CT | 356 | 435 | 1.80E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.129 |
| SRR1783600 | control | 12.365 |
| SRR1783602 | moderate drought stress | 14.100 |
| SRR1811619 | moderate drought stress | 13.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.964 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.335 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.175 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.690 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.814 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.226 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.682 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.883 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.463 |
| SRR2967015 | Control (Tissue:root) | 17.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.465 |
| SRR9715740 | Leave | 15.001 |
| SRR9715741 | Leave | 11.967 |
| SRR9715739 | Root | 5.973 |
| SRR9715742 | Root | 18.011 |
| SRR9715743 | Root | 16.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.919 |
| SRR8749028 | MeJA induced 9h | 13.963 |
| SRR8749029 | MeJA induced 9h | 19.265 |
| SRR8749030 | Uninduced | 6.474 |
| SRR8749031 | Uninduced | 5.501 |
| SRR8749032 | Uninduced | 8.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.201 |
| SRR8400027 | Control-Root | 19.433 |