Gene detail information of Glyur000125s00010017.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G52180.19.00E-111dual specificity protein phosphatase (DsPTP1) family protein
NRXP_003556295.10PREDICTED: phosphoglucan phosphatase DSP4, chloroplastic-like [Glycine max]
Swissprottr|G4LTX4|DSP4_CASSA4.00E-164Phosphoglucan phosphatase DSP4, amyloplastic {ECO:0000250|UniProtKB:Q9FEB5} (Precursor)
trEMBLtr|I1NHQ7|I1NHQ7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G33190.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0012595512102433+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005982  starch metabolic process

GO:0006470  protein dephosphorylation

GO:0007623  circadian rhythm

GO:0016311  dephosphorylation


molecular_function

GO:0008138  protein tyrosine/serine/threonine phosphatase activity

GO:0016791  phosphatase activity

GO:0019203  carbohydrate phosphatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000125s00010017.2PF00782.15DSPc1712424.50E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control83.099
SRR1783600control83.432
SRR1783602moderate drought stress74.726
SRR1811619moderate drought stress74.156

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain108.879
DRR006520Root Summer glycyrrhizin high producing strain107.274
DRR006521Root Winter glycyrrhizin high producing strain195.691
DRR006522Root Winter glycyrrhizin high producing strain189.112
DRR006523Root Summer glycyrrhizin low producing strain75.648
DRR006524Root Summer glycyrrhizin low producing strain76.363
DRR006525Leaf Summer glycyrrhizin high producing strain92.655
DRR006526Leaf Summer glycyrrhizin high producing strain92.538

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.731
SRR2868004Drought Stress(Tissue:root)35.654
SRR2967015Control (Tissue:root)44.472

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.465
SRR9715740Leave43.949
SRR9715741Leave31.288
SRR9715739Root18.000
SRR9715742Root27.226
SRR9715743Root26.590

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.259
SRR8749028MeJA induced 9h34.108
SRR8749029MeJA induced 9h27.956
SRR8749030Uninduced38.986
SRR8749031Uninduced34.814
SRR8749032Uninduced22.680

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root69.980
SRR8400027Control-Root77.626

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved