Gene detail information of Glyur000125s00010021.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47430.10Signal transduction histidine kinase
NRXP_004496150.10PREDICTED: histidine kinase CKI1-like [Cicer arietinum]
COGYP_007082232.12.00E-32signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
Swissprottr|O22267|CKI1_ARATH0Histidine kinase CKI1
trEMBLtr|A0A072VZ96|A0A072VZ96_MEDTR0Histidine kinase 1 {ECO:0000313|EMBL:KEH43350.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00125120177129235+


Gene family

Gene familysubfamily
Transcription Factors FamilyOrphans
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0000160  phosphorelay signal transduction system

GO:0007165  signal transduction

GO:0016310  phosphorylation


cellular_component

GO:0016020  membrane


molecular_function

GO:0000155  phosphorelay sensor kinase activity

GO:0004871  signal transducer activity

GO:0005515  protein binding

GO:0016772  transferase activity, transferring phosphorus-containing groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000125s00010021.2PF00646.28F-box2426.80E-10
Glyur000125s00010021.2PF00512.20HisKA7788394.00E-05
Glyur000125s00010021.2PF02518.21HATPase_c89110471.10E-25
Glyur000125s00010021.2PF00072.19Response_reg138315009.00E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.228
SRR1783600control9.261
SRR1783602moderate drought stress17.737
SRR1811619moderate drought stress17.638

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.164
DRR006520Root Summer glycyrrhizin high producing strain9.302
DRR006521Root Winter glycyrrhizin high producing strain5.869
DRR006522Root Winter glycyrrhizin high producing strain5.806
DRR006523Root Summer glycyrrhizin low producing strain8.002
DRR006524Root Summer glycyrrhizin low producing strain8.411
DRR006525Leaf Summer glycyrrhizin high producing strain5.429
DRR006526Leaf Summer glycyrrhizin high producing strain5.475

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.757
SRR2868004Drought Stress(Tissue:root)15.057
SRR2967015Control (Tissue:root)15.458

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.654
SRR9715740Leave8.095
SRR9715741Leave9.304
SRR9715739Root5.834
SRR9715742Root7.466
SRR9715743Root7.367

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.681
SRR8749028MeJA induced 9h7.214
SRR8749029MeJA induced 9h4.327
SRR8749030Uninduced8.905
SRR8749031Uninduced8.257
SRR8749032Uninduced5.585

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.480
SRR8400027Control-Root20.854

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved