Gene detail information of Glyur000125s00010026.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G62020.10Coatomer, alpha subunit
NRXP_004496148.10PREDICTED: coatomer subunit alpha-1-like [Cicer arietinum]
COGYP_007129139.15.00E-37WD-40 repeat-containing protein [Gloeocapsa sp. PCC 7428]
Swissprottr|Q94A40|COPA1_ARATH0Coatomer subunit alpha-1
trEMBLtr|V7BIE1|V7BIE1_PHAVU0Coatomer subunit alpha {ECO:0000256|PIRNR:PIRNR003354}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00125153567158324+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0016192  vesicle-mediated transport


cellular_component

GO:0030117  membrane coat

GO:0030126  COPI vesicle coat


molecular_function

GO:0005198  structural molecule activity

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000125s00010026.1PF00400.27WD4043791.20E-07
Glyur000125s00010026.1PF00400.27WD40841211.10E-09
Glyur000125s00010026.1PF00400.27WD401261632.20E-10
Glyur000125s00010026.1PF00400.27WD401962312.30E-07
Glyur000125s00010026.1PF00400.27WD402422764.10E-07
Glyur000125s00010026.1PF04053.9Coatomer_WDAD3457671.80E-134
Glyur000125s00010026.1PF06957.6COPI_C82812181.20E-174


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.401
SRR1783600control42.686
SRR1783602moderate drought stress36.136
SRR1811619moderate drought stress35.997

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain43.656
DRR006520Root Summer glycyrrhizin high producing strain43.017
DRR006521Root Winter glycyrrhizin high producing strain31.804
DRR006522Root Winter glycyrrhizin high producing strain30.936
DRR006523Root Summer glycyrrhizin low producing strain41.684
DRR006524Root Summer glycyrrhizin low producing strain41.526
DRR006525Leaf Summer glycyrrhizin high producing strain18.919
DRR006526Leaf Summer glycyrrhizin high producing strain18.930

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.536
SRR2868004Drought Stress(Tissue:root)53.192
SRR2967015Control (Tissue:root)54.740

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.266
SRR9715740Leave22.454
SRR9715741Leave21.356
SRR9715739Root26.371
SRR9715742Root46.006
SRR9715743Root44.003

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.894
SRR8749028MeJA induced 9h23.784
SRR8749029MeJA induced 9h14.346
SRR8749030Uninduced11.193
SRR8749031Uninduced8.769
SRR8749032Uninduced10.254

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.337
SRR8400027Control-Root44.679

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved