Gene detail information of Glyur000125s00010036.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G04860.12.00E-105ubiquitin-specific protease 2
NRXP_006601870.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like [Glycine max]
COGYP_006705230.18.00E-08Ubiquitin specific protease [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
Swissprottr|Q8W4N3|UBP2_ARATH0Ubiquitin carboxyl-terminal hydrolase 2
trEMBLtr|I1MY83|I1MY83_SOYBN0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00125208866212139-


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0008270  zinc ion binding

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000125s00010036.1PF02148.14zf-UBP751684.30E-10
Glyur000125s00010036.1PF00443.24UCH2339901.10E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.797
SRR1783600control8.531
SRR1783602moderate drought stress7.537
SRR1811619moderate drought stress7.505

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.768
DRR006520Root Summer glycyrrhizin high producing strain9.653
DRR006521Root Winter glycyrrhizin high producing strain11.927
DRR006522Root Winter glycyrrhizin high producing strain11.348
DRR006523Root Summer glycyrrhizin low producing strain7.059
DRR006524Root Summer glycyrrhizin low producing strain7.238
DRR006525Leaf Summer glycyrrhizin high producing strain4.083
DRR006526Leaf Summer glycyrrhizin high producing strain3.935

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.415
SRR2868004Drought Stress(Tissue:root)10.135
SRR2967015Control (Tissue:root)11.825

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.740
SRR9715740Leave7.838
SRR9715741Leave6.319
SRR9715739Root0.998
SRR9715742Root9.152
SRR9715743Root8.093

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.544
SRR8749028MeJA induced 9h11.887
SRR8749029MeJA induced 9h8.480
SRR8749030Uninduced12.071
SRR8749031Uninduced9.267
SRR8749032Uninduced4.793

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.759
SRR8400027Control-Root11.947

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved