Gene detail information of Glyur000125s00010038.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13560.34.00E-177O-Glycosyl hydrolases family 17 protein
NRKHN12071.10Glucan endo-1,3-beta-glucosidase 4, partial [Glycine soja]
Swissprottr|Q94CD8|E134_ARATH0Glucan endo-1,3-beta-glucosidase 4 (Precursor)
trEMBLtr|G7JA37|G7JA37_MEDTR0O-glycosyl hydrolase family 17 protein {ECO:0000313|EMBL:AES71865.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00125222565225444-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH17,CBM43


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19892GN4 EC:3.2.1.39 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000125s00010038.2PF00332.13Glyco_hydro_17303501.30E-81
Glyur000125s00010038.2PF07983.8X83654363.80E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control65.375
SRR1783600control65.872
SRR1783602moderate drought stress10.222
SRR1811619moderate drought stress10.729

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.170
DRR006520Root Summer glycyrrhizin high producing strain8.438
DRR006521Root Winter glycyrrhizin high producing strain1.967
DRR006522Root Winter glycyrrhizin high producing strain2.151
DRR006523Root Summer glycyrrhizin low producing strain2.191
DRR006524Root Summer glycyrrhizin low producing strain1.953
DRR006525Leaf Summer glycyrrhizin high producing strain0.966
DRR006526Leaf Summer glycyrrhizin high producing strain0.939

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.711
SRR2868004Drought Stress(Tissue:root)3.613
SRR2967015Control (Tissue:root)3.632

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.664
SRR9715740Leave0.513
SRR9715741Leave0.754
SRR9715739Root14.532
SRR9715742Root8.256
SRR9715743Root7.281

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h96.125
SRR8749028MeJA induced 9h94.695
SRR8749029MeJA induced 9h59.723
SRR8749030Uninduced4.666
SRR8749031Uninduced1.267
SRR8749032Uninduced2.273

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.533
SRR8400027Control-Root24.908

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved