Gene detail information of Glyur000125s00010053.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G56340.1 | 3.00E-59 | RING/U-box superfamily protein |
NR | AES71855.2 | 5.86E-137 | zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula] |
Swissprot | tr|P0CH30|RING1_GOSHI | 7.00E-48 | E3 ubiquitin-protein ligase RING1 |
trEMBL | tr|G7J9L6|G7J9L6_MEDTR | 2.00E-137 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES71855.2} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00125 | 306933 | 310046 | - |
Gene family
Gene family | subfamily |
---|---|
Ubiquitin Family | RING |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000125s00010053.1 | PF14369.1 | zf-RING_3 | 8 | 39 | 3.90E-09 |
Glyur000125s00010053.1 | PF13639.1 | zf-RING_2 | 309 | 351 | 6.60E-13 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 34.200 |
SRR1783600 | control | 34.424 |
SRR1783602 | moderate drought stress | 28.798 |
SRR1811619 | moderate drought stress | 28.634 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 49.789 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 49.133 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 34.711 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 33.060 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 50.847 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 50.996 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.263 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.023 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 54.279 |
SRR2868004 | Drought Stress(Tissue:root) | 70.887 |
SRR2967015 | Control (Tissue:root) | 68.598 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 30.838 |
SRR9715740 | Leave | 48.963 |
SRR9715741 | Leave | 47.096 |
SRR9715739 | Root | 49.755 |
SRR9715742 | Root | 50.205 |
SRR9715743 | Root | 49.063 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 56.631 |
SRR8749028 | MeJA induced 9h | 81.828 |
SRR8749029 | MeJA induced 9h | 66.022 |
SRR8749030 | Uninduced | 97.737 |
SRR8749031 | Uninduced | 105.043 |
SRR8749032 | Uninduced | 97.361 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 58.974 |
SRR8400027 | Control-Root | 58.907 |