Gene detail information of Glyur000125s00010053.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G56340.13.00E-59RING/U-box superfamily protein
NRAES71855.25.86E-137zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]
Swissprottr|P0CH30|RING1_GOSHI7.00E-48E3 ubiquitin-protein ligase RING1
trEMBLtr|G7J9L6|G7J9L6_MEDTR2.00E-137Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES71855.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00125306933310046-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000125s00010053.1PF14369.1zf-RING_38393.90E-09
Glyur000125s00010053.1PF13639.1zf-RING_23093516.60E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.200
SRR1783600control34.424
SRR1783602moderate drought stress28.798
SRR1811619moderate drought stress28.634

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain49.789
DRR006520Root Summer glycyrrhizin high producing strain49.133
DRR006521Root Winter glycyrrhizin high producing strain34.711
DRR006522Root Winter glycyrrhizin high producing strain33.060
DRR006523Root Summer glycyrrhizin low producing strain50.847
DRR006524Root Summer glycyrrhizin low producing strain50.996
DRR006525Leaf Summer glycyrrhizin high producing strain18.263
DRR006526Leaf Summer glycyrrhizin high producing strain18.023

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.279
SRR2868004Drought Stress(Tissue:root)70.887
SRR2967015Control (Tissue:root)68.598

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.838
SRR9715740Leave48.963
SRR9715741Leave47.096
SRR9715739Root49.755
SRR9715742Root50.205
SRR9715743Root49.063

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.631
SRR8749028MeJA induced 9h81.828
SRR8749029MeJA induced 9h66.022
SRR8749030Uninduced97.737
SRR8749031Uninduced105.043
SRR8749032Uninduced97.361

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root58.974
SRR8400027Control-Root58.907

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved