Gene detail information of Glyur000125s00010054.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14103.2 | 4.00E-15 | F-box/RNI-like superfamily protein |
| NR | KHN36945.1 | 5.14E-36 | F-box/FBD/LRR-repeat protein [Glycine soja] |
| Swissprot | tr|Q8L7H1|FBL75_ARATH | 1.00E-16 | F-box/LRR-repeat protein At4g14103 |
| trEMBL | tr|K7MMN5|K7MMN5_SOYBN | 1.00E-35 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G27890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00125 | 310992 | 316189 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000125s00010054.1 | PF00646.28 | F-box | 137 | 166 | 1.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.006 |
| SRR1783600 | control | 1.934 |
| SRR1783602 | moderate drought stress | 1.330 |
| SRR1811619 | moderate drought stress | 1.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.637 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.592 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.027 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.748 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.769 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.230 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.497 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.445 |
| SRR2967015 | Control (Tissue:root) | 0.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.465 |
| SRR9715740 | Leave | 0.089 |
| SRR9715741 | Leave | 0.117 |
| SRR9715739 | Root | 0.551 |
| SRR9715742 | Root | 1.198 |
| SRR9715743 | Root | 0.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.021 |
| SRR8749028 | MeJA induced 9h | 0.041 |
| SRR8749029 | MeJA induced 9h | 0.037 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.145 |
| SRR8400027 | Control-Root | 2.681 |