Gene detail

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Gene detail information of Glyur000126s00013645.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65685.2	5.00E-129	UDP-Glycosyltransferase superfamily protein
NR	XP_010105108.1	0	hypothetical protein L484_016097 [Morus notabilis]
COG	YP_004652703.1	8.00E-63	glycogen synthase [Parachlamydia acanthamoebae UV-7]
Swissprot	tr\|Q0WVX5\|SSY4_ARATH	4.00E-97	Probable starch synthase 4, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|W9RQN2\|W9RQN2_9ROSA	0	Uncharacterized protein {ECO:0000313\|EMBL:EXC03893.1}

Sequence

Transcript Sequence

>Glyur000126s00013645.1
ATACGAGACTCGGGGGGGGGGGGGGGTTGGAAATTTCTGGAACGCCAAAATAAAAAGACCTTCCCCTCCCAATTCTTCCCCCTTTTCGGCTGCTCTCATTCATTCACGATCCCATCGCTGCGTTGTTGCTTTGAGCACAAAATCCACGTTGATTCTCTATTTCTGCATGAAATCGCAATGCGGGGCTATGACAGAGATGAGGAACTTCAGGATTACGATGATTATTATGAGGATGAACAACAGGAGGAAGGGGAAGAACATGAAGACGAGGAAGGGGAAGGATATGAAGAGGAAGAAGAACCTCGTAAGCCAACAAAGGAAGAACTGGAATACCTTGAGTTGAGGCAGAAGTTGAAAGAGTCCATTAGAAAGAAAATGAAGACGGAGAGTAGTACTTCCCGTGCAGATTCTAGTGCTAGAAAGCAGAAAATTTCTCATGATAATTATGGGTCCTTTTTCGGCCCTTCTCAACCGGTTATTGCACAAAGAGTAATCCAAGAGAGCAAGTCGTTGCTAGAAAACCAGCATTTGGTGTCTAGGATTTCTAACTCAACTCACATGAACAAAAATACAAATAAAGTATCCAATGGAGTGTCGAAGTTATCAACTCATAATCAGCCACCCAAAGTCAATGAGAAGCAAGTTAAAGCTGAGAAACTCAAGGTTACTAGAGATTACTCATTTCTTTTGTCTGATGATGCGGAGCTTCCTGCTCCAGNAAAAGAGCCCCCGTCTCGGAATACATCTGCATGCAATTCTGAGGGACGACCAGCTCAAGTTGCAGGGAAGAGTAAACAACCTTTGAACAATGGTGGCAAGCTTGTTCATCGCAGTGGTGAGGACCAAAAACTTGTTGGTGGGGCTAGTCATTTAGCTCCTAAATCAAGATCCAATTATAAGTTAAGTTCTACCAGTAAGTCCAGTGAGGCACCCNTGGATTCTAGAAAACAGCTTGGTAGCAACAGTGGGAATGGACCAGGCCGGCCAGTGGGGCCAAAAGGCTTGCCTTCAAAGATGCCTGTTAATACCATGGGGAATAAGTCACTCACACCTGGTATGAAAAAGCCGGTGAATGGTGTGCATAAACCACTTCCTTCAAAGGTTCCATCGTNTATTCCAAAGCTGAGTGTGGAACAAAGAAAAGATGTACGAGAACAGAATAAACCTAAAATATTACCAAAACAACCAGTGGTATCATCAAAGGCCCAGGTAAATAAACCACCACCTAAACAAATTCCTAAGNGTGCTGATTTGCATGATCACCGCCCGAAGAATAAGGTTGGGAAACGATGCCCTGATGAGGCTGAGGATGAAATGGATATTAGCAGAATGATCAGATCAATGTTTAATTACAACCCCAACAGATTTGTTGACGACGATGACGATGATAATATGGAGGCAGGCTTTGATGAAATCTTGAANGAGGAAAGGAGGAGTGCTAAAATTGCTAGAGAGGAGGATGAGGAGCAACTTAGATTGATAGAAGAGGAGGAGCGGAGACGACGATTGGCCAAGTTAAAGAAGCGAATAATGGAGAGGTCAACAGCTTACATGAACAAAGGGGGTAATAAAAATGAGGACATGTCTCAGCTCATATCTGGTGATGTCCAGAATGCGAAACATGATAATATTTGGCAATTGTTCAGAGAAGCTCAGCAGAACATACTATACTTAAACAAACAACGCCTTGTTGCCATTGAGGAGCTTAACAAAACAAACGGAGAAAAACAGTTGCTACTCAATAAGATAAAGAAATTGGAAGCAGAAAAGCAGGCTGGTGCTGATAAGCTATCAATTTGTTCGGAATTGCTGCTTCGAATAGACTCAATGGTCGTTAGCAGCTTGATTAGCCCTGGAGAGGCATCTGAATTAAGAAGTTTGGTGGTAAACCACAAAGTGAGTGTGGCTGATGTTTTTAATATNATCTCGAATAAAAGAGATTCTGAACTTCTGGGAGAACTTCGTCACTTTTCAGATGGAAGCAAAAAGAATGGTTTTCATATTATTCATATTTGCACAGAAATGACACCATTGGTCCCTAGAGGATCTGTAGCATCATATGTAACCGGCATATCTCGTGCACTTCAAAGAAAGGGCCACCTGGTGGAGGTTATATTGCCCAAGTATGCATGTCTAAACCTGGATGAAGTTCAAGGGTTGCGCGAAGTAAAAACAGAGGCTTACTCATATTTTAATGGTCAATTGCATGGAAACAAAATTTGGACTGGTGTTGTTTATGGTATTGGAGTCACATTGATCGAGCCATTGAAGTATTCATCCTTTTTCAGCCGTGAGATGATATATGGNTACCCAGATGATTTTGAAAGGTTTTCTTATTTCTGTCGTGCCTCACTGGATTATATAGTAAAATGTGGGAAGCAGCCGGATGTATTGCATCTACATAACTGGGAGACTGCCATTGTTGGGCCCCTTTTCTGGGATATATTTGTTAACAAGGGTATCGAGCAACCAGATAAATTGGCCTTATGTGGGCTTGATCCTTTAAGCCTTCATCGCCCTGACCGTTTGCAAGACAACACTAACACACAACTTGTCAATATTTTAAAGGGGGGAGTTGTCTATTCAAATAGAATTGTAATAATGTCATCTATCCATCCAAAGCACATAATTGTTCGTAATTTGAGTCATGAACTGGAATCCACTTTAAATGCTCATAGGGACAAGTTGGTCATTTCTCCTTATGGATTAGACAAATCAACATGGGATCCTTCAACAGACTATTTTCTTCCAGAAAATTTCAATGCTGAAAATATGAATGGAAAAGCTGTTTGCAAAGTTGCATTGCTGCAGCAGCTGGGGTTATCTGAGCATTCTTCTATTATTCTTGTTGGATGCATCTTTTCAGATGGAGCTGAAATTGATGAGAAAAAGGTGAAGGATGTTGTTCTGAATGTTAAGCAGCATGACGTCCAGTTTATATTTATGGGGACCAGTGAAAGTTCAGTCTTGAATGAGGCACTAGAATCACTTCAGAAGGAACTCAAGGATGATAATCTTAAATTTGTGCTTGCATATGATGAAGCTCTATCTCATTTACTCTTCGCAGCATCCGACATTATCTTGTGTCAATCTTTTCTTGATCCTACTGATGAAACCCCACTCAAAGCTTTAAGGAACTTCATAAACCATGACTATGAGGCCACTAAGTACTCAAAGTTAATCAACACTACCTTTGGAAACATGTCACTTAGCCTTGCCGTTGATGAAATTAGGAGTAACCCATCCAATTGGAAGCGAAGAATAATGGAAGCAATGGCGCATGACTTATCGTGGGATGGTGAATGCTACGAAGTTCATNTTGCAGCTTACTCAGCTATAAAGAATTTTTGAAGTGGGTCTAATTTACATGTATGTATATATGTNAAGATTTTTTGTTTAGTATTTTGAGATAGATATGGTTGTTCATTATTTGTAAGTCGAGTTCCTCAAACTCGATATGTTGTAAAATTTGTACCATAATAATCATTCANGATGAGAACCAAAACCCGTCAAGTTACAATGAGAATGATGAAGGGATTGAAAGTGTAATAC

Protein Sequence

>Glyur000126s00013645.1
IRDSGGGGGWKFLERQNKKTFPSQFFPLFGCSHSFTIPSLRCCFEHKIHVDSLFLHEIAMRGYDRDEELQDYDDYYEDEQQEEGEEHEDEEGEGYEEEEEPRKPTKEELEYLELRQKLKESIRKKMKTESSTSRADSSARKQKISHDNYGSFFGPSQPVIAQRVIQESKSLLENQHLVSRISNSTHMNKNTNKVSNGVSKLSTHNQPPKVNEKQVKAEKLKVTRDYSFLLSDDAELPAPXKEPPSRNTSACNSEGRPAQVAGKSKQPLNNGGKLVHRSGEDQKLVGGASHLAPKSRSNYKLSSTSKSSEAPXDSRKQLGSNSGNGPGRPVGPKGLPSKMPVNTMGNKSLTPGMKKPVNGVHKPLPSKVPSXIPKLSVEQRKDVREQNKPKILPKQPVVSSKAQVNKPPPKQIPKXADLHDHRPKNKVGKRCPDEAEDEMDISRMIRSMFNYNPNRFVDDDDDDNMEAGFDEILXEERRSAKIAREEDEEQLRLIEEEERRRRLAKLKKRIMERSTAYMNKGGNKNEDMSQLISGDVQNAKHDNIWQLFREAQQNILYLNKQRLVAIEELNKTNGEKQLLLNKIKKLEAEKQAGADKLSICSELLLRIDSMVVSSLISPGEASELRSLVVNHKVSVADVFNXISNKRDSELLGELRHFSDGSKKNGFHIIHICTEMTPLVPRGSVASYVTGISRALQRKGHLVEVILPKYACLNLDEVQGLREVKTEAYSYFNGQLHGNKIWTGVVYGIGVTLIEPLKYSSFFSREMIYGYPDDFERFSYFCRASLDYIVKCGKQPDVLHLHNWETAIVGPLFWDIFVNKGIEQPDKLALCGLDPLSLHRPDRLQDNTNTQLVNILKGGVVYSNRIVIMSSIHPKHIIVRNLSHELESTLNAHRDKLVISPYGLDKSTWDPSTDYFLPENFNAENMNGKAVCKVALLQQLGLSEHSSIILVGCIFSDGAEIDEKKVKDVVLNVKQHDVQFIFMGTSESSVLNEALESLQKELKDDNLKFVLAYDEALSHLLFAASDIILCQSFLDPTDETPLKALRNFINHDYEATKYSKLINTTFGNMSLSLAVDEIRSNPSNWKRRIMEAMAHDLSWDGECYEVHXAAYSAIKNF

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00126	79141	96238	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000126s00013645.1	PF08243.6	SPT2	419	507	6.70E-17
Glyur000126s00013645.1	PF08323.6	Glyco_transf_5	667	890	2.20E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.766
SRR1783600	control	56.680
SRR1783602	moderate drought stress	100.649
SRR1811619	moderate drought stress	99.672

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.137
DRR006520	Root Summer glycyrrhizin high producing strain	52.422
DRR006521	Root Winter glycyrrhizin high producing strain	52.020
DRR006522	Root Winter glycyrrhizin high producing strain	50.517
DRR006523	Root Summer glycyrrhizin low producing strain	91.557
DRR006524	Root Summer glycyrrhizin low producing strain	91.581
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.847
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.812

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	45.511
SRR2868004	Drought Stress(Tissue:root)	47.407
SRR2967015	Control (Tissue:root)	47.825

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	27.934
SRR9715740	Leave	34.957
SRR9715741	Leave	31.953
SRR9715739	Root	3.506
SRR9715742	Root	20.915
SRR9715743	Root	19.173

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.749
SRR8749028	MeJA induced 9h	69.528
SRR8749029	MeJA induced 9h	67.258
SRR8749030	Uninduced	55.361
SRR8749031	Uninduced	84.016
SRR8749032	Uninduced	75.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	69.127
SRR8400027	Control-Root	69.884