Gene detail information of Glyur000126s00013646.2 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G37870.1 | 0 | phosphoenolpyruvate carboxykinase 1 |
NR | XP_003517125.1 | 0 | PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Glycine max] |
COG | YP_003290475.1 | 0 | phosphoenolpyruvate carboxykinase [Rhodothermus marinus DSM 4252] |
Swissprot | tr|Q9T074|PCKA_ARATH | 0 | Phosphoenolpyruvate carboxykinase [ATP] |
trEMBL | tr|I1J4W3|I1J4W3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G02330.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00126 | 97815 | 128510 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01610 | E4.1.1.49, pckA | EC:4.1.1.49 | Carbon metabolism | map01200 |
Glycolysis / Gluconeogenesis | map00010 | |||
Citrate cycle (TCA cycle) | map00020 | |||
Pyruvate metabolism | map00620 | |||
Carbon fixation in photosynthetic organisms | map00710 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000126s00013646.2 | PF01293.15 | PEPCK_ATP | 178 | 304 | 1.60E-33 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 320.319 |
SRR1783600 | control | 323.349 |
SRR1783602 | moderate drought stress | 474.549 |
SRR1811619 | moderate drought stress | 469.764 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 112.255 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 110.685 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 2.857 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 2.704 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 425.163 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 426.356 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.799 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.515 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 593.717 |
SRR2868004 | Drought Stress(Tissue:root) | 450.686 |
SRR2967015 | Control (Tissue:root) | 315.819 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 27.056 |
SRR9715740 | Leave | 10.854 |
SRR9715741 | Leave | 23.202 |
SRR9715739 | Root | 102.126 |
SRR9715742 | Root | 225.315 |
SRR9715743 | Root | 198.129 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 1206.361 |
SRR8749028 | MeJA induced 9h | 2848.431 |
SRR8749029 | MeJA induced 9h | 1590.406 |
SRR8749030 | Uninduced | 545.857 |
SRR8749031 | Uninduced | 626.536 |
SRR8749032 | Uninduced | 505.094 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 255.128 |
SRR8400027 | Control-Root | 208.530 |