Gene detail information of Glyur000126s00013646.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37870.10phosphoenolpyruvate carboxykinase 1
NRXP_003517125.10PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Glycine max]
COGYP_003290475.10phosphoenolpyruvate carboxykinase [Rhodothermus marinus DSM 4252]
Swissprottr|Q9T074|PCKA_ARATH0Phosphoenolpyruvate carboxykinase [ATP]
trEMBLtr|I1J4W3|I1J4W3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G02330.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0012697815128510-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01610E4.1.1.49, pckA EC:4.1.1.49 Carbon metabolism map01200
Glycolysis / Gluconeogenesismap00010
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0006094  gluconeogenesis


molecular_function

GO:0004611  phosphoenolpyruvate carboxykinase activity

GO:0004612  phosphoenolpyruvate carboxykinase (ATP) activity

GO:0005524  ATP binding

GO:0017076  purine nucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000126s00013646.3PF01293.15PEPCK_ATP362131.00E-77


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control320.319
SRR1783600control323.349
SRR1783602moderate drought stress474.549
SRR1811619moderate drought stress469.764

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain112.255
DRR006520Root Summer glycyrrhizin high producing strain110.685
DRR006521Root Winter glycyrrhizin high producing strain2.857
DRR006522Root Winter glycyrrhizin high producing strain2.704
DRR006523Root Summer glycyrrhizin low producing strain425.163
DRR006524Root Summer glycyrrhizin low producing strain426.356
DRR006525Leaf Summer glycyrrhizin high producing strain10.799
DRR006526Leaf Summer glycyrrhizin high producing strain10.515

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)593.717
SRR2868004Drought Stress(Tissue:root)450.686
SRR2967015Control (Tissue:root)315.819

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.056
SRR9715740Leave10.854
SRR9715741Leave23.202
SRR9715739Root102.126
SRR9715742Root225.315
SRR9715743Root198.129

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1206.361
SRR8749028MeJA induced 9h2848.431
SRR8749029MeJA induced 9h1590.406
SRR8749030Uninduced545.857
SRR8749031Uninduced626.536
SRR8749032Uninduced505.094

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root255.128
SRR8400027Control-Root208.530

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved