Gene detail information of Glyur000126s00013658.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10560.1 | 0 | Glycosyl hydrolase family protein |
| NR | XP_004512546.1 | 0 | PREDICTED: probable beta-D-xylosidase 6-like [Cicer arietinum] |
| COG | YP_004464029.1 | 1.00E-146 | glycoside hydrolase [Mahella australiensis 50-1 BON] |
| Swissprot | tr|Q9LXA8|BXL6_ARATH | 0 | Probable beta-D-xylosidase 6 (Precursor) |
| trEMBL | tr|G7KF67|G7KF67_MEDTR | 0 | Glycoside hydrolase family 3 protein {ECO:0000313|EMBL:AES95902.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00126 | 230959 | 234645 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000126s00013658.1 | PF00933.16 | Glyco_hydro_3 | 69 | 360 | 5.70E-61 |
| Glyur000126s00013658.1 | PF01915.17 | Glyco_hydro_3_C | 404 | 634 | 4.50E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.750 |
| SRR1783600 | control | 10.734 |
| SRR1783602 | moderate drought stress | 8.309 |
| SRR1811619 | moderate drought stress | 8.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.406 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.169 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.015 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.556 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.201 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.023 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.022 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.692 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.046 |
| SRR2967015 | Control (Tissue:root) | 19.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.855 |
| SRR9715740 | Leave | 4.939 |
| SRR9715741 | Leave | 5.842 |
| SRR9715739 | Root | 5.429 |
| SRR9715742 | Root | 9.106 |
| SRR9715743 | Root | 9.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.397 |
| SRR8749028 | MeJA induced 9h | 15.209 |
| SRR8749029 | MeJA induced 9h | 7.858 |
| SRR8749030 | Uninduced | 7.797 |
| SRR8749031 | Uninduced | 5.561 |
| SRR8749032 | Uninduced | 6.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.992 |
| SRR8400027 | Control-Root | 16.710 |