Gene detail information of Glyur000127s00009136.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G34930.10arogenate dehydrogenase
NRXP_004508423.10PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Cicer arietinum]
COGYP_005063728.11.00E-39prephenate dehydrogenase [Sphaerochaeta pleomorpha str. Grapes]
Swissprottr|Q944B6|TYRA1_ARATH0Arogenate dehydrogenase 1, chloroplastic (Precursor)
trEMBLtr|A0A072UR36|A0A072UR36_MEDTR0Prephenate dehydrogenase {ECO:0000313|EMBL:KEH32147.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001271725719843+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15227TYRAAT EC:1.3.1.78 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0006571  tyrosine biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004665  prephenate dehydrogenase (NADP+) activity

GO:0008977  prephenate dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000127s00009136.1PF02153.12PDH1063282.40E-14
Glyur000127s00009136.1PF02153.12PDH4125871.90E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.543
SRR1783600control16.612
SRR1783602moderate drought stress19.009
SRR1811619moderate drought stress18.313

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.021
DRR006520Root Summer glycyrrhizin high producing strain12.942
DRR006521Root Winter glycyrrhizin high producing strain8.379
DRR006522Root Winter glycyrrhizin high producing strain8.021
DRR006523Root Summer glycyrrhizin low producing strain11.518
DRR006524Root Summer glycyrrhizin low producing strain11.488
DRR006525Leaf Summer glycyrrhizin high producing strain5.790
DRR006526Leaf Summer glycyrrhizin high producing strain5.650

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.066
SRR2868004Drought Stress(Tissue:root)9.682
SRR2967015Control (Tissue:root)9.995

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.951
SRR9715740Leave4.620
SRR9715741Leave4.204
SRR9715739Root5.414
SRR9715742Root13.262
SRR9715743Root11.060

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.937
SRR8749028MeJA induced 9h10.185
SRR8749029MeJA induced 9h8.357
SRR8749030Uninduced4.243
SRR8749031Uninduced4.973
SRR8749032Uninduced5.615

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.590
SRR8400027Control-Root14.130

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved