Gene detail information of Glyur000127s00009139.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G34940.20glucuronidase 3
NRXP_003542659.10PREDICTED: heparanase-like protein 3-like [Glycine max]
Swissprottr|Q9FZP1|HPSE3_ARATH0Heparanase-like protein 3 (Precursor)
trEMBLtr|I1LZU1|I1LZU1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G23190.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001273262436270-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH79


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07964HPSE EC:3.2.1.166 Glycosaminoglycan degradation map00531
Proteoglycans in cancermap05205


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0016798  hydrolase activity, acting on glycosyl bonds

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000127s00009139.1PF03662.9Glyco_hydro_79n353502.00E-155


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.839
SRR1783600control1.888
SRR1783602moderate drought stress0.917
SRR1811619moderate drought stress0.915

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.228
DRR006520Root Summer glycyrrhizin high producing strain2.353
DRR006521Root Winter glycyrrhizin high producing strain0.669
DRR006522Root Winter glycyrrhizin high producing strain0.707
DRR006523Root Summer glycyrrhizin low producing strain4.136
DRR006524Root Summer glycyrrhizin low producing strain4.049
DRR006525Leaf Summer glycyrrhizin high producing strain16.167
DRR006526Leaf Summer glycyrrhizin high producing strain16.808

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.139
SRR2868004Drought Stress(Tissue:root)7.370
SRR2967015Control (Tissue:root)10.314

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.641
SRR9715740Leave8.332
SRR9715741Leave3.571
SRR9715739Root2.945
SRR9715742Root3.339
SRR9715743Root2.692

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.069
SRR8749028MeJA induced 9h4.197
SRR8749029MeJA induced 9h4.115
SRR8749030Uninduced1.213
SRR8749031Uninduced0.457
SRR8749032Uninduced1.653

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.200
SRR8400027Control-Root16.454

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved