Gene detail information of Glyur000127s00009177.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45290.1 | 1.00E-36 | RING/U-box superfamily protein |
| NR | XP_003549707.1 | 0 | PREDICTED: uncharacterized protein DDB_G0271670-like [Glycine max] |
| Swissprot | tr|Q8W571|ATL32_ARATH | 3.00E-14 | RING-H2 finger protein ATL32 (Precursor) |
| trEMBL | tr|I1MTZ7|I1MTZ7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G11390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00127 | 229861 | 233758 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000127s00009177.1 | PF13639.1 | zf-RING_2 | 471 | 514 | 3.50E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.530 |
| SRR1783600 | control | 21.636 |
| SRR1783602 | moderate drought stress | 18.550 |
| SRR1811619 | moderate drought stress | 18.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.710 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.724 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 55.441 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.920 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.562 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.244 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 36.028 |
| SRR2868004 | Drought Stress(Tissue:root) | 42.883 |
| SRR2967015 | Control (Tissue:root) | 42.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.410 |
| SRR9715740 | Leave | 34.133 |
| SRR9715741 | Leave | 30.873 |
| SRR9715739 | Root | 13.630 |
| SRR9715742 | Root | 16.674 |
| SRR9715743 | Root | 15.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.030 |
| SRR8749028 | MeJA induced 9h | 28.957 |
| SRR8749029 | MeJA induced 9h | 21.612 |
| SRR8749030 | Uninduced | 12.225 |
| SRR8749031 | Uninduced | 9.426 |
| SRR8749032 | Uninduced | 10.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.751 |
| SRR8400027 | Control-Root | 25.975 |