Gene detail

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Gene detail information of Glyur000128s00010762.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50420.1	3.00E-95	scarecrow-like 3
NR	XP_007149008.1	0	hypothetical protein PHAVU_005G032800g [Phaseolus vulgaris]
Swissprot	tr\|Q9LPR8\|SCL3_ARATH	8.00E-114	Scarecrow-like protein 3
trEMBL	tr\|V7BSM2\|V7BSM2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW21002.1}

Sequence

Transcript Sequence

>Glyur000128s00010762.1
ATGGAAGGTGAGGATAGGGGCAAATACCTGGTCCGTATTCTTAAAGCATGTGCCAAGTTTATTGAGTCATGCAGCNTTGAATATGCAGACACTGCACTTGACTATCTTGCTCACATTGCTTCCCCTGATGGTGATGCAATGCAGCGGGTAGCCACCTATGTCAGTGAGGGGCTAGTTCTCCAAGTGCTGAAAAACTTGCAAGGTGTACCTAAAGCTCTAAGCTTGCCAAAAACATTGTCAGCCTCAGAAGAACAGCTTGTTAAGAACTTGTTCTCTCAGTTGTATCCATTTTCAAAGGTTGCATATGCGGTCACAAGTCATGCCATTGTTGAAGCCATGGGAAAGGAAGAAGTGATTCACATCATTGATCTCAGTGCATCTGAATCCCAGTGGATTTATCTTATGCAGAGATTGAAAGAACNTCAGAAGAGGCCGCAACTTCTGAAAATTACAGGCATTCATGACAAGGAGGAAGTTTTAGAGCAAATTTCCCTTCACTTAAGAGTAGAAGCTGAAAAGTTGAATTTTGATCTCCAATTCAATCGTATGGTAAGCAGTTTGGTGAATCTTGACCTTGATAGATTNCCTGTGAGGAAAGGAGAGATTCTTATAATCAGTTCAATGCTTCAGCTCCACTCTCTTCTGGCCACTGATGATTCAATGGTCTGCAGTACGAACACCCCAGAAGAATCAATGAATCAAAGGACANTGGGAGAGGTGCTTGGGAAACAAANGATCAACCCTGATNCATTATTGTTGACACTTCCTCTATGTGCTTCTTCACCCAAGATGGGGTGCTTTCTAAATGGTCTGAAGAAACTCCAACCTAGAATGGTGGTGATTACTGAACAAGAATCCAATACCAATAATGCTTCTTTGACAGAAAGAGTTGACAAAGCATTGGGATTCTATGGTGCATTGTTCAATTGCTTGGAGTCAACTGTTTCAGAAACAAAAGTCGAGAGAATCATACTTGAGAGGACTCTGCTGGGGGAGGAAATAAAGAACATTCTTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAGCTTGAGTCTTGGATCCCAAGGCTTGAATTGGCTGGGTTTGGGAGGGTACCTATCAGCCATGATTGGATGATGCAGGCAGAAAAGGAGTTGCATGGNTATGGAAATGGATATAAACTTCTTCAGGAGAATAAATGTTTGTTTGTGTGCTGGAATGATAAGCCACTCTTTTCTGTGTCAGTCTGGAAGGTTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00128	6849	8093	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function GO:0000989 transcription factor activity, transcription factor binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000128s00010762.1	PF03514.9	GRAS	10	413	2.00E-95

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.218
SRR1783600	control	0.465
SRR1783602	moderate drought stress	0.082
SRR1811619	moderate drought stress	0.091

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.174
DRR006520	Root Summer glycyrrhizin high producing strain	0.173
DRR006521	Root Winter glycyrrhizin high producing strain	0.179
DRR006522	Root Winter glycyrrhizin high producing strain	0.156
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.072

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.068
SRR2868004	Drought Stress(Tissue:root)	0.079
SRR2967015	Control (Tissue:root)	0.021

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.161
SRR9715740	Leave	0.229
SRR9715741	Leave	0.156
SRR9715739	Root	0.120
SRR9715742	Root	0.000
SRR9715743	Root	0.098

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.078
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.255
SRR8749031	Uninduced	0.062
SRR8749032	Uninduced	0.080

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.217
SRR8400027	Control-Root	0.048