Gene detail information of Glyur000128s00010769.4 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54160.1 | 9.00E-77 | O-methyltransferase 1 |
| NR | XP_003598824.1 | 0 | O-methyltransferase [Medicago truncatula] |
| COG | YP_007119185.1 | 1.00E-29 | O-demethylpuromycin O-methyltransferase [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|P93324|CHOMT_MEDSA | 4.00E-122 | Isoliquiritigenin 2'-O-methyltransferase |
| trEMBL | tr|G7IZ47|G7IZ47_MEDTR | 0 | Caffeic acid O-methyltransferase {ECO:0000313|EMBL:AES69075.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00128 | 32797 | 38789 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13066 | E2.1.1.68, COMT | EC:2.1.1.68 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000128s00010769.4 | PF00891.13 | Methyltransf_2 | 1 | 178 | 3.10E-66 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.065 |
| SRR1783600 | control | 0.065 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.094 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.093 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.076 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.842 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.668 |
| SRR2967015 | Control (Tissue:root) | 0.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 33.622 |
| SRR9715740 | Leave | 38.158 |
| SRR9715741 | Leave | 57.018 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.013 |
| SRR9715743 | Root | 0.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.552 |
| SRR8749028 | MeJA induced 9h | 2.705 |
| SRR8749029 | MeJA induced 9h | 1.115 |
| SRR8749030 | Uninduced | 7.336 |
| SRR8749031 | Uninduced | 12.285 |
| SRR8749032 | Uninduced | 6.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.488 |
| SRR8400027 | Control-Root | 0.674 |