Gene detail information of Glyur000128s00010798.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10970.1 | 1.00E-30 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_007161148.1 | 2.23E-115 | hypothetical protein PHAVU_001G046500g [Phaseolus vulgaris] |
| Swissprot | tr|Q39262|ZFP3_ARATH | 1.00E-34 | Zinc finger protein 3 |
| trEMBL | tr|V7CSK3|V7CSK3_PHAVU | 8.00E-116 | Uncharacterized protein {ECO:0000313|EMBL:ESW33142.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00128 | 180980 | 181888 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 68.315 |
| SRR1783600 | control | 67.481 |
| SRR1783602 | moderate drought stress | 84.385 |
| SRR1811619 | moderate drought stress | 85.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.760 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.455 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.615 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.466 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.155 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.848 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.980 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 79.760 |
| SRR2868004 | Drought Stress(Tissue:root) | 104.827 |
| SRR2967015 | Control (Tissue:root) | 93.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.030 |
| SRR9715740 | Leave | 2.118 |
| SRR9715741 | Leave | 2.505 |
| SRR9715739 | Root | 19.036 |
| SRR9715742 | Root | 45.993 |
| SRR9715743 | Root | 31.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.357 |
| SRR8749028 | MeJA induced 9h | 15.472 |
| SRR8749029 | MeJA induced 9h | 11.345 |
| SRR8749030 | Uninduced | 0.658 |
| SRR8749031 | Uninduced | 0.951 |
| SRR8749032 | Uninduced | 1.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 62.512 |
| SRR8400027 | Control-Root | 53.899 |