Gene detail information of Glyur000128s00010799.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G19810.12.00E-75Glycosyl hydrolase family protein with chitinase insertion domain
NRXP_004498784.10PREDICTED: chitotriosidase-1-like [Cicer arietinum]
COGYP_007146068.16.00E-43chitinase [Cylindrospermum stagnale PCC 7417]
trEMBLtr|I1MWY7|I1MWY7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G33190.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00128188627190663+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006032  chitin catabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004568  chitinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000128s00010799.1PF00704.23Glyco_hydro_18483726.90E-81


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.672
SRR1783600control0.653
SRR1783602moderate drought stress0.257
SRR1811619moderate drought stress0.226

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.508
DRR006520Root Summer glycyrrhizin high producing strain1.492
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain1.826
DRR006524Root Summer glycyrrhizin low producing strain1.832
DRR006525Leaf Summer glycyrrhizin high producing strain22.785
DRR006526Leaf Summer glycyrrhizin high producing strain22.666

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.289
SRR2868004Drought Stress(Tissue:root)51.606
SRR2967015Control (Tissue:root)26.827

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.094
SRR9715740Leave14.224
SRR9715741Leave24.678
SRR9715739Root7.645
SRR9715742Root22.653
SRR9715743Root19.693

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h65.865
SRR8749028MeJA induced 9h302.788
SRR8749029MeJA induced 9h244.230
SRR8749030Uninduced479.441
SRR8749031Uninduced671.696
SRR8749032Uninduced380.712

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.983
SRR8400027Control-Root10.269

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved