Gene detail information of Glyur000128s00010800.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25180.1 | 4.00E-102 | response regulator 12 |
| NR | KHN46344.1 | 0 | Two-component response regulator ARR12 [Glycine soja] |
| COG | YP_007157184.1 | 1.00E-16 | two component transcriptional regulator, winged helix family [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|P62598|ARR12_ARATH | 5.00E-121 | Two-component response regulator ARR12 |
| trEMBL | tr|I1MWY8|I1MWY8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G33230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00128 | 198590 | 203033 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARR-B |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000128s00010800.1 | PF00072.19 | Response_reg | 22 | 128 | 2.40E-22 |
| Glyur000128s00010800.1 | PF00249.26 | Myb_DNA-binding | 208 | 247 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.486 |
| SRR1783600 | control | 2.420 |
| SRR1783602 | moderate drought stress | 2.984 |
| SRR1811619 | moderate drought stress | 2.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.552 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.403 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.721 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.696 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.642 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.425 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.238 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.533 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.274 |
| SRR2967015 | Control (Tissue:root) | 23.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.049 |
| SRR9715740 | Leave | 0.043 |
| SRR9715741 | Leave | 0.155 |
| SRR9715739 | Root | 0.095 |
| SRR9715742 | Root | 2.890 |
| SRR9715743 | Root | 2.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.527 |
| SRR8749028 | MeJA induced 9h | 4.382 |
| SRR8749029 | MeJA induced 9h | 1.661 |
| SRR8749030 | Uninduced | 10.089 |
| SRR8749031 | Uninduced | 3.345 |
| SRR8749032 | Uninduced | 2.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.908 |
| SRR8400027 | Control-Root | 1.783 |