Gene detail

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Gene detail information of Glyur000128s00010802.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31910.1	1.00E-109	HXXXD-type acyl-transferase family protein
NR	XP_006596077.1	0	PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Glycine max]
Swissprot	tr\|Q94CD1\|HHT1_ARATH	6.00E-39	Omega-hydroxypalmitate O-feruloyl transferase
trEMBL	tr\|I1M9E8\|I1M9E8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G13310.1}

Sequence

Transcript Sequence

>Glyur000128s00010802.1
ATGGCTGCTGCACCTGCACGACATGATGATCATCAGATTAATGATCCTAATAGCAGCATGGTTTCCATTTCAAGGATCGTGTCTGTGCATCCCAAACTTATAAGTGTGCAACCAGCTGAGAGTGAGAGGGTTTTNAACCTTTCAAATCTGGATAGACAGTGTCCCAACCACATGCACTTGGTCTTCTTTTATAATAANATTGATTGTTTGTCCCTCAATTCAGTGTTCTCCAGCTTGAAATCTGGGTTGGAAGAGACCCTGACTCTGTGGTACCCAGGTGCGGGTAGGTTGAGCAAGAATTACCAAAGTGGTGATGATGGCAAGCTCAATCTATGGTGCAACAACCAGGGTGCAGTTCTGGCAGAGGCTCAAACTCCCACTAAAATCTCACACCTTGGAGACCTCTCTCAGTACAATGAATTCTTTGAGAAGCTGGTTTATAAGCCACCTTTTGATGGGAATTTTTCAAACATGCCTCTGATTGCTGCTCAGGTTACAAAATTTGGTTGTGGAGGGTATTCAATTGGTATAGGAACAAGTCACTCATTATTTGACGGGCCAGCAACCTATGATTTCTTGTATGCATGGGCTTCAAATTCTGAAATTGTATTGAAAGGATCAACAAGGAGATCATCTCATCATCATGAGCTGCCAAAACCAGTGCATGAGAGGGGGATACTACTAAGTGGTAGCAGTAGTCATCAATTAGCCCCAAGAGGGACAACAACTATAAATTTTGCTTCAGTAGGCTCAAGCTTAAATAATGCTCATCAGCAGCAGCAAGGAACAAGGGCCATGGCAATAGATCATCTATATCAACTTATAATGCAAGCAGCTAGTGAACAAAAGGGCTTTCAGCAACTGCAAATTGGACCCTCTGATCAGAAGAAGAAGAACTATACTGTTCTAAAAACCTATCATGTATCTGGTGCAATGATAGATGGCTTGAAAAGGAAACACTTCCCCATGAGGAGAGGTTCCCTTCCCTTCTCAACCTTTGAGATTCTTGCTGCTCACCTTTGGAAGGCAAGGACCAAAGCTTTAGGAGTGAGGAAAGAGAAGCTGGTATGCCTGCAATTCACAGTGAACACAAGGAACAAGGTGTTTCCCCCATTGCCTAAAGGTTTCAGTGGAAACGCTTATGTTCTTGCCTCCATCATGATGTCAGCAGCAGAACTGGAACATGCAAGCCATGAAGACATAATTGGCAAAATAAGAGAAGCCAAGAATGGTGTTAATCATGAGTATGTGAGAGCCTACATTGAAGCACTGCAAGGACCACCAAATGCTTCTTCTAATTCTAATTCTCTCCCTCCACTGGATGAGCTAACTCTGGTTTCTGATTGGACAAGAATGCCCTTTCATAACATTGAGTTCTTTCATGGAAAGAAAGCAGCCTATGCTTGCCCTTTGGCTACCCCAATTCCCCAGGTTGCTTACTTCATGCAGAATCCTTGTGATGATGGGGGTGTTGATGTGAGAATTGGTTTCCAAGCAGATCAATCCATAAGTGCTTTTACTCACTGCTTTTTAAGCAGAGGGCANTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00128	204902	207670	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15400	HHT1	EC:2.3.1.188	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000128s00010802.1	PF02458.10	Transferase	42	500	4.60E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.282
SRR1783600	control	0.348
SRR1783602	moderate drought stress	0.264
SRR1811619	moderate drought stress	0.269

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.069
DRR006520	Root Summer glycyrrhizin high producing strain	0.069
DRR006521	Root Winter glycyrrhizin high producing strain	0.071
DRR006522	Root Winter glycyrrhizin high producing strain	0.070
DRR006523	Root Summer glycyrrhizin low producing strain	0.641
DRR006524	Root Summer glycyrrhizin low producing strain	0.714
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.049
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.059

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.241
SRR2868004	Drought Stress(Tissue:root)	3.948
SRR2967015	Control (Tissue:root)	2.618

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.086
SRR9715740	Leave	0.205
SRR9715741	Leave	0.211
SRR9715739	Root	0.057
SRR9715742	Root	0.429
SRR9715743	Root	0.299

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.796
SRR8749028	MeJA induced 9h	100.966
SRR8749029	MeJA induced 9h	53.487
SRR8749030	Uninduced	19.003
SRR8749031	Uninduced	9.540
SRR8749032	Uninduced	23.259

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.143
SRR8400027	Control-Root	0.336