Gene detail information of Glyur000128s00010803.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G25170.10chromatin remodeling factor CHD3 (PICKLE)
NRKHN29616.10CHD3-type chromatin-remodeling factor PICKLE [Glycine soja]
COGYP_004750858.13.00E-74SNF2-like protein [Collimonas fungivorans Ter331]
Swissprottr|Q9S775|PKL_ARATH0CHD3-type chromatin-remodeling factor PICKLE
trEMBLtr|K7KIG0|K7KIG0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G06630.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00128211465227342-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11643CHD4, MI2B EC:3.6.4.12 Viral carcinogenesis map05203


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000128s00010803.1PF00628.24PHD611036.90E-08
Glyur000128s00010803.1PF00385.19Chromo1912389.40E-13
Glyur000128s00010803.1PF00176.18SNF2_N2875831.80E-69
Glyur000128s00010803.1PF00271.26Helicase_C6427203.80E-13
Glyur000128s00010803.1PF06465.8DUF10878298806.70E-12
Glyur000128s00010803.1PF06461.6DUF108691510521.10E-48
Glyur000128s00010803.1PF08074.6CHDCT2106410972.60E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.948
SRR1783600control0.956
SRR1783602moderate drought stress2.474
SRR1811619moderate drought stress2.427

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.479
DRR006520Root Summer glycyrrhizin high producing strain2.503
DRR006521Root Winter glycyrrhizin high producing strain1.728
DRR006522Root Winter glycyrrhizin high producing strain1.643
DRR006523Root Summer glycyrrhizin low producing strain0.654
DRR006524Root Summer glycyrrhizin low producing strain0.634
DRR006525Leaf Summer glycyrrhizin high producing strain0.446
DRR006526Leaf Summer glycyrrhizin high producing strain0.425

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.597
SRR2868004Drought Stress(Tissue:root)1.382
SRR2967015Control (Tissue:root)0.883

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.731
SRR9715740Leave0.271
SRR9715741Leave2.135
SRR9715739Root0.089
SRR9715742Root0.739
SRR9715743Root0.601

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.426
SRR8749028MeJA induced 9h1.504
SRR8749029MeJA induced 9h1.321
SRR8749030Uninduced0.541
SRR8749031Uninduced0.379
SRR8749032Uninduced0.396

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.641
SRR8400027Control-Root3.029

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved