Gene detail information of Glyur000128s00010810.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10790.1 | 2.00E-162 | ubiquitin-specific protease 22 |
| NR | XP_006596071.1 | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like isoform X1 [Glycine max] |
| COG | YP_006705230.1 | 3.00E-08 | Ubiquitin specific protease [Cardinium endosymbiont cEper1 of Encarsia pergandiella] |
| Swissprot | tr|Q9LEW0|UBP22_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 22 |
| trEMBL | tr|I1M9E2|I1M9E2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G13100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00128 | 274213 | 277588 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000128s00010810.1 | PF02148.14 | zf-UBP | 48 | 107 | 1.50E-09 |
| Glyur000128s00010810.1 | PF00443.24 | UCH | 162 | 502 | 1.20E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.621 |
| SRR1783600 | control | 3.645 |
| SRR1783602 | moderate drought stress | 3.915 |
| SRR1811619 | moderate drought stress | 3.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.943 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.795 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.966 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.395 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.023 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.145 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.808 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.837 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.767 |
| SRR2967015 | Control (Tissue:root) | 13.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.266 |
| SRR9715740 | Leave | 3.205 |
| SRR9715741 | Leave | 5.067 |
| SRR9715739 | Root | 1.507 |
| SRR9715742 | Root | 3.818 |
| SRR9715743 | Root | 3.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.169 |
| SRR8749028 | MeJA induced 9h | 3.402 |
| SRR8749029 | MeJA induced 9h | 3.654 |
| SRR8749030 | Uninduced | 4.376 |
| SRR8749031 | Uninduced | 3.343 |
| SRR8749032 | Uninduced | 4.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.041 |
| SRR8400027 | Control-Root | 11.254 |