Gene detail information of Glyur000129s00012432.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G56570.12.00E-153SET domain-containing protein
NRXP_004495465.10PREDICTED: ribosomal N-lysine methyltransferase 3-like [Cicer arietinum]
Swissprottr|Q6NQJ8|SDG40_ARATH1.00E-13Protein SET DOMAIN GROUP 40
trEMBLtr|I1NIE2|I1NIE2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G35710.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001292585028979+


Gene family

Gene familysubfamily
Transcription Factors FamilySET


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0018026  peptidyl-lysine monomethylation


molecular_function

GO:0005515  protein binding

GO:0016279  protein-lysine N-methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000129s00012432.1PF00856.23SET352907.50E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.773
SRR1783600control2.755
SRR1783602moderate drought stress2.956
SRR1811619moderate drought stress2.948

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.712
DRR006520Root Summer glycyrrhizin high producing strain2.911
DRR006521Root Winter glycyrrhizin high producing strain2.883
DRR006522Root Winter glycyrrhizin high producing strain2.846
DRR006523Root Summer glycyrrhizin low producing strain4.127
DRR006524Root Summer glycyrrhizin low producing strain4.045
DRR006525Leaf Summer glycyrrhizin high producing strain0.763
DRR006526Leaf Summer glycyrrhizin high producing strain0.697

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.316
SRR2868004Drought Stress(Tissue:root)6.603
SRR2967015Control (Tissue:root)6.883

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.464
SRR9715740Leave2.330
SRR9715741Leave2.242
SRR9715739Root0.446
SRR9715742Root2.100
SRR9715743Root2.286

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.320
SRR8749028MeJA induced 9h6.974
SRR8749029MeJA induced 9h8.872
SRR8749030Uninduced3.972
SRR8749031Uninduced2.797
SRR8749032Uninduced3.983

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.864
SRR8400027Control-Root7.117

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved