Gene detail information of Glyur000129s00012446.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G20860.16.00E-103FAD-binding Berberine family protein
NRXP_003555533.10PREDICTED: reticuline oxidase-like [Glycine max]
COGYP_001252780.13.00E-35FAD-binding protein [Clostridium botulinum A str. ATCC 3502]
Swissprottr|P30986|RETO_ESCCA1.00E-148Reticuline oxidase (Precursor)
trEMBLtr|I1NID0|I1NID0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G35570.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001298316285019-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyAA7


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0008762  UDP-N-acetylmuramate dehydrogenase activity

GO:0016491  oxidoreductase activity

GO:0016614  oxidoreductase activity, acting on CH-OH group of donors

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000129s00012446.1PF01565.18FAD_binding_4321711.30E-31
Glyur000129s00012446.1PF08031.7BBE4254894.00E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.249
SRR1783600control0.291
SRR1783602moderate drought stress0.752
SRR1811619moderate drought stress0.716

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.787
DRR006520Root Summer glycyrrhizin high producing strain0.762
DRR006521Root Winter glycyrrhizin high producing strain0.221
DRR006522Root Winter glycyrrhizin high producing strain0.289
DRR006523Root Summer glycyrrhizin low producing strain0.291
DRR006524Root Summer glycyrrhizin low producing strain0.291
DRR006525Leaf Summer glycyrrhizin high producing strain1.796
DRR006526Leaf Summer glycyrrhizin high producing strain1.857

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.611
SRR2868004Drought Stress(Tissue:root)1.796
SRR2967015Control (Tissue:root)1.512

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.417
SRR9715740Leave0.635
SRR9715741Leave1.339
SRR9715739Root0.000
SRR9715742Root0.020
SRR9715743Root0.154

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.763
SRR8749028MeJA induced 9h0.616
SRR8749029MeJA induced 9h0.827
SRR8749030Uninduced0.595
SRR8749031Uninduced0.552
SRR8749032Uninduced0.884

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.926
SRR8400027Control-Root0.744

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved