Gene detail information of Glyur000129s00012463.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63410.1 | 2.00E-136 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | XP_004495419.1 | 0 | PREDICTED: 37 kDa inner envelope membrane protein, chloroplastic-like [Cicer arietinum] |
| COG | YP_006542083.1 | 1.00E-43 | Methyltransferase type 11 [Natrinema sp. J7-2] |
| Swissprot | tr|Q9LY74|BQMT_ARATH | 8.00E-177 | 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic (Precursor) |
| trEMBL | tr|A0A072VMH0|A0A072VMH0_MEDTR | 0 | 2-methyl-6-phytylbenzoquinone methyltransferase {ECO:0000313|EMBL:KEH42806.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00129 | 196428 | 198571 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12502 | VTE3, APG1 | EC:2.1.1.295 | Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000129s00012463.1 | PF08241.7 | Methyltransf_11 | 117 | 212 | 6.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.371 |
| SRR1783600 | control | 10.500 |
| SRR1783602 | moderate drought stress | 9.107 |
| SRR1811619 | moderate drought stress | 8.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.715 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.617 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.285 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.127 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.751 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.005 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.273 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.236 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.663 |
| SRR2967015 | Control (Tissue:root) | 0.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 37.780 |
| SRR9715740 | Leave | 39.915 |
| SRR9715741 | Leave | 28.597 |
| SRR9715739 | Root | 9.197 |
| SRR9715742 | Root | 4.201 |
| SRR9715743 | Root | 5.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.045 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.135 |
| SRR8400027 | Control-Root | 4.682 |