Gene detail information of Glyur000129s00012477.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76390.27.00E-38ARM repeat superfamily protein
NRKEH42796.10E3 ubiquitin ligase PUB14, putative [Medicago truncatula]
COGYP_001957542.15.00E-06hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9SFX2|PUB43_ARATH4.00E-42U-box domain-containing protein 43
trEMBLtr|A0A072VMF8|A0A072VMF8_MEDTR0E3 ubiquitin ligase PUB14, putative {ECO:0000313|EMBL:KEH42796.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00129273783277237-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000129s00012477.1PF04564.10U-box2643291.90E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.203
SRR1783600control0.216
SRR1783602moderate drought stress0.087
SRR1811619moderate drought stress0.075

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.537
DRR006520Root Summer glycyrrhizin high producing strain0.528
DRR006521Root Winter glycyrrhizin high producing strain0.369
DRR006522Root Winter glycyrrhizin high producing strain0.427
DRR006523Root Summer glycyrrhizin low producing strain1.774
DRR006524Root Summer glycyrrhizin low producing strain1.772
DRR006525Leaf Summer glycyrrhizin high producing strain26.504
DRR006526Leaf Summer glycyrrhizin high producing strain26.360

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.467
SRR2868004Drought Stress(Tissue:root)13.196
SRR2967015Control (Tissue:root)12.236

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave181.045
SRR9715740Leave237.087
SRR9715741Leave215.093
SRR9715739Root9.538
SRR9715742Root38.555
SRR9715743Root33.364

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.160
SRR8749028MeJA induced 9h20.649
SRR8749029MeJA induced 9h13.143
SRR8749030Uninduced62.344
SRR8749031Uninduced13.154
SRR8749032Uninduced7.547

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.604
SRR8400027Control-Root11.897

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved