Gene detail information of Glyur000129s00012484.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38180.1 | 8.00E-08 | FAR1-related sequence 5 |
| NR | KEH20760.1 | 6.54E-26 | Ulp1 protease family, carboxy-terminal domain protein [Medicago truncatula] |
| Swissprot | tr|Q9SZL8|FRS5_ARATH | 6.00E-09 | Protein FAR1-RELATED SEQUENCE 5 |
| trEMBL | tr|A0A072U4K6|A0A072U4K6_MEDTR | 2.00E-26 | Ulp1 protease family, carboxy-terminal domain protein {ECO:0000313|EMBL:KEH20760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00129 | 295076 | 296003 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000129s00012484.1 | PF03101.10 | FAR1 | 64 | 134 | 5.70E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.054 |
| SRR1783600 | control | 0.016 |
| SRR1783602 | moderate drought stress | 0.576 |
| SRR1811619 | moderate drought stress | 0.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.225 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.053 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.157 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.121 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.127 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.011 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.063 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.092 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.845 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.015 |
| SRR8400027 | Control-Root | 0.076 |