Gene detail information of Glyur000130s00006884.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G17380.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
NRXP_004489192.10PREDICTED: 2-hydroxyacyl-CoA lyase-like [Cicer arietinum]
COGYP_006216662.12.00E-135putative oxalyl-CoA decarboxylase [Providencia stuartii MRSN 2154]
Swissprottr|Q9LF46|HACL_ARATH02-hydroxyacyl-CoA lyase
trEMBLtr|V7B832|V7B832_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW13984.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001302286230246+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12261HACL1 EC:4.1.-.- Peroxisome map04146


Gene Ontology

molecular_function

GO:0000287  magnesium ion binding

GO:0003824  catalytic activity

GO:0030976  thiamine pyrophosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000130s00006884.1PF02776.13TPP_enzyme_N111723.70E-44
Glyur000130s00006884.1PF00205.17TPP_enzyme_M2013151.90E-21
Glyur000130s00006884.1PF02775.16TPP_enzyme_C3855363.70E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control59.357
SRR1783600control59.693
SRR1783602moderate drought stress71.268
SRR1811619moderate drought stress71.396

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain59.387
DRR006520Root Summer glycyrrhizin high producing strain58.765
DRR006521Root Winter glycyrrhizin high producing strain94.697
DRR006522Root Winter glycyrrhizin high producing strain92.163
DRR006523Root Summer glycyrrhizin low producing strain74.995
DRR006524Root Summer glycyrrhizin low producing strain75.071
DRR006525Leaf Summer glycyrrhizin high producing strain33.757
DRR006526Leaf Summer glycyrrhizin high producing strain33.326

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)152.376
SRR2868004Drought Stress(Tissue:root)123.700
SRR2967015Control (Tissue:root)109.000

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave56.560
SRR9715740Leave53.326
SRR9715741Leave68.157
SRR9715739Root164.880
SRR9715742Root152.857
SRR9715743Root158.176

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.867
SRR8749028MeJA induced 9h74.323
SRR8749029MeJA induced 9h41.437
SRR8749030Uninduced68.451
SRR8749031Uninduced23.642
SRR8749032Uninduced58.575

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root75.113
SRR8400027Control-Root63.230

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved