Gene detail information of Glyur000130s00006917.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14550.1 | 2.00E-133 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | XP_003630312.1 | 0 | BC10 protein [Medicago truncatula] |
| trEMBL | tr|V7BY52|V7BY52_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW22927.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00130 | 234229 | 239352 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000130s00006917.2 | PF02485.16 | Branch | 65 | 307 | 5.00E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.374 |
| SRR1783600 | control | 9.681 |
| SRR1783602 | moderate drought stress | 7.178 |
| SRR1811619 | moderate drought stress | 7.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.454 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.715 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.537 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.612 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.301 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.345 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.139 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.939 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.943 |
| SRR2967015 | Control (Tissue:root) | 18.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.993 |
| SRR9715740 | Leave | 13.287 |
| SRR9715741 | Leave | 13.651 |
| SRR9715739 | Root | 1.157 |
| SRR9715742 | Root | 7.907 |
| SRR9715743 | Root | 5.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.515 |
| SRR8749028 | MeJA induced 9h | 9.122 |
| SRR8749029 | MeJA induced 9h | 3.690 |
| SRR8749030 | Uninduced | 4.614 |
| SRR8749031 | Uninduced | 0.931 |
| SRR8749032 | Uninduced | 0.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.720 |
| SRR8400027 | Control-Root | 24.331 |