Gene detail information of Glyur000130s00006919.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40390.1 | 0 | Raffinose synthase family protein |
| NR | XP_007150934.1 | 0 | hypothetical protein PHAVU_004G007100g [Phaseolus vulgaris] |
| COG | YP_004464004.1 | 2.00E-43 | raffinose synthase [Mahella australiensis 50-1 BON] |
| Swissprot | tr|Q8VWN6|RFS_PEA | 0 | Galactinol--sucrose galactosyltransferase |
| trEMBL | tr|V7C0M6|V7C0M6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW22928.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00130 | 252345 | 256489 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH36 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06617 | E2.4.1.82 | EC:2.4.1.82 | Galactose metabolism | map00052 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000130s00006919.1 | PF05691.7 | Raffinose_syn | 295 | 719 | 4.50E-206 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.134 |
| SRR1783600 | control | 7.901 |
| SRR1783602 | moderate drought stress | 3.989 |
| SRR1811619 | moderate drought stress | 3.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.750 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.286 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.749 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.714 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.101 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.835 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.657 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 39.019 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.155 |
| SRR2967015 | Control (Tissue:root) | 52.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.598 |
| SRR9715740 | Leave | 19.516 |
| SRR9715741 | Leave | 19.533 |
| SRR9715739 | Root | 29.538 |
| SRR9715742 | Root | 43.336 |
| SRR9715743 | Root | 41.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.867 |
| SRR8749028 | MeJA induced 9h | 2.869 |
| SRR8749029 | MeJA induced 9h | 1.756 |
| SRR8749030 | Uninduced | 1.161 |
| SRR8749031 | Uninduced | 0.621 |
| SRR8749032 | Uninduced | 0.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.953 |
| SRR8400027 | Control-Root | 32.395 |